PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN38950.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

G2-like

Protein Properties

Length: 390aa MW: 43808.7 Da PI: 9.5364

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN38950.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102.1	3.6e-32	209	262	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ KHN38950.1 209 PRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 262 9****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.15E-15	206	262	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.5E-28	207	262	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	9.3E-24	209	262	IPR006447	Myb domain, plants
Pfam	PF00249	6.8E-7	210	261	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 390 aa Download sequence Send to blast
MELFPAQPDL SLQISPPNAK PTSSWRRSTE EDMDLGFWKR ALDSRNSIQS MAKQDSCFDL 60 SLSNPKASDN NNNHHSNTTT SNLIHHHHFQ NGATPTNATT TTTNPFQLPF QKNHYFHQQQ 120 QPLFQPQHQS LSQDLGFLRP IRGIPVYQNP PPIPFTQHHH HHHLPLEAST TTPSIISNTN 180 NGSTPFHSQA LMRSRFLSRF PAKRSMRAPR MRWTSTLHAR FVHAVELLGG HERATPKSVL 240 ELMDVKDLTL AHVKSHLQMY RTVKTTDRAA ASSGQSDVYD NGSSGDTSDD LMFDIKSSRR 300 SDLSVKQGRS SVNQDKEYHG LWGNSSREAW LHGKTKTDSV GNVPFSLEKE MDPKCLSYER 360 ISDGSSSSNL SGSSPKKPNL DLEFSLGQPL

Sequence ? help Back to Top

Protein Sequence Length: 390 aa Download sequence Send to blast

MELFPAQPDL SLQISPPNAK PTSSWRRSTE EDMDLGFWKR ALDSRNSIQS MAKQDSCFDL  60
SLSNPKASDN NNNHHSNTTT SNLIHHHHFQ NGATPTNATT TTTNPFQLPF QKNHYFHQQQ  120
QPLFQPQHQS LSQDLGFLRP IRGIPVYQNP PPIPFTQHHH HHHLPLEAST TTPSIISNTN  180
NGSTPFHSQA LMRSRFLSRF PAKRSMRAPR MRWTSTLHAR FVHAVELLGG HERATPKSVL  240
ELMDVKDLTL AHVKSHLQMY RTVKTTDRAA ASSGQSDVYD NGSSGDTSDD LMFDIKSSRR  300
SDLSVKQGRS SVNQDKEYHG LWGNSSREAW LHGKTKTDSV GNVPFSLEKE MDPKCLSYER  360
ISDGSSSSNL SGSSPKKPNL DLEFSLGQPL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-16	210	264	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-16	210	264	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-16	210	264	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-16	210	264	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-16	210	264	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-16	210	264	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-16	210	264	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-16	210	264	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269\|PubMed:11525739, ECO:0000269\|PubMed:15286295, ECO:0000269\|PubMed:16623911, ECO:0000269\|PubMed:17307928}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN38950.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006587600.1	0.0	probable transcription factor KAN2
Refseq	XP_028182074.1	0.0	probable transcription factor KAN2
Swissprot	Q9C616	4e-75	KAN2_ARATH; Probable transcription factor KAN2
TrEMBL	A0A445J3V0	0.0	A0A445J3V0_GLYSO; Putative transcription factor KAN2
TrEMBL	K7LF36	0.0	K7LF36_SOYBN; Uncharacterized protein
STRING	GLYMA09G34030.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5968	34	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32240.1	2e-76	G2-like family protein

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis. Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71 [PMID:26108442]