![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | KHN38761.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 845aa MW: 92489.5 Da PI: 6.11 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.4 | 2.5e-18 | 25 | 83 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le++++++++ps +r++L +++ +++ +q+kvWFqNrR +ek+ KHN38761.1 25 KYVRYTAEQVEALERVYAECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 83 56789****************************************************97 PP | |||||||
2 | START | 161.1 | 8.1e-51 | 164 | 371 | 2 | 204 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXX CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvael 98 +aee+++e+++ka+ ++ Wv+++ +++g++++ +f+ s+++sg a+ra+g+v +++ +e+l+d++ W +++++ e+ g g+++l ++++ KHN38761.1 164 IAEETLTEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSCSGVAARACGLVSLEPT-KIAEILKDRPSWFRDCRSLEVFTMFPAGngGTIELVYTQT 261 789*******************************************************.7777777777***********999999999********** PP TTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHH CS START 99 qalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaega 193 +a+++l+p Rdf+++Ry+ +l+ g++v++++S++ p+ +++vRae+lpSg+li+p+++g+s +++v+h +l++++++++lr+l++s+ + ++ KHN38761.1 262 YAPTTLAPaRDFWTLRYTTSLENGSLVVCERSLSGSGTGPNpaaAAQFVRAETLPSGYLIRPCEGGGSIIHIVDHLNLEAWSVPEVLRPLYESSKVVAQ 360 *********************************987777777899****************************************************** PP HHHHHHTXXXX CS START 194 ktwvatlqrqc 204 k++ a+l++ + KHN38761.1 361 KMTIAALRYIR 371 ******99865 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.24 | 20 | 84 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.1E-15 | 22 | 88 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.1E-16 | 24 | 87 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 4.82E-16 | 25 | 85 | No hit | No description |
Pfam | PF00046 | 7.5E-16 | 26 | 83 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 3.0E-18 | 27 | 83 | IPR009057 | Homeodomain-like |
CDD | cd14686 | 1.79E-6 | 77 | 116 | No hit | No description |
PROSITE profile | PS50848 | 27.299 | 154 | 382 | IPR002913 | START domain |
CDD | cd08875 | 6.18E-71 | 158 | 374 | No hit | No description |
Gene3D | G3DSA:3.30.530.20 | 1.8E-19 | 163 | 363 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 5.77E-34 | 163 | 375 | No hit | No description |
SMART | SM00234 | 1.1E-41 | 163 | 373 | IPR002913 | START domain |
Pfam | PF01852 | 2.1E-48 | 164 | 371 | IPR002913 | START domain |
Pfam | PF08670 | 8.9E-46 | 698 | 844 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009855 | Biological Process | determination of bilateral symmetry | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0009956 | Biological Process | radial pattern formation | ||||
GO:0010014 | Biological Process | meristem initiation | ||||
GO:0010051 | Biological Process | xylem and phloem pattern formation | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 845 aa Download sequence Send to blast |
MAMVVAQHRE SSSSGSIDKH LDSGKYVRYT AEQVEALERV YAECPKPSSL RRQQLIRECP 60 ILSNIEPKQI KVWFQNRRCR EKQRKEASRL QTVNRKLTAM NKLLMEENDR LQKQVSQLVC 120 ENGFMRQQLH TPSATTTDAS CDSVVTTPQH TLRDASNPAG LLSIAEETLT EFLSKATGTA 180 VDWVQMPGMK PGPDSVGIFA ISQSCSGVAA RACGLVSLEP TKIAEILKDR PSWFRDCRSL 240 EVFTMFPAGN GGTIELVYTQ TYAPTTLAPA RDFWTLRYTT SLENGSLVVC ERSLSGSGTG 300 PNPAAAAQFV RAETLPSGYL IRPCEGGGSI IHIVDHLNLE AWSVPEVLRP LYESSKVVAQ 360 KMTIAALRYI RQIAQETSGE VVYGLGRQPA VLRTFSQRLS RGFNDAVNGF NDDGWTVLNC 420 DGAEDVIIAV NSTKNLSGTS NPASSLTFLG GILCAKASML LQNVPPAVLV RFLREHRSEW 480 ADFNVDAYSA ASLKAGTYAY PGMRPTRFTG SQIIMPLGHT IEHEEMLEVI RLEGHSLAQE 540 DAFVSRDIHL LQICSGIDEN AVGACSELVF APIDEMFPDD APLVPSGFRI IPLDSKPGDK 600 KDAVATNRTL DLTSGFEVGP ATTAGADASS SQNTRSVLTI AFQFPFDSSL QDNVAVMARQ 660 YVRSVISSVQ RVAMAISPSG INPSIGAKLS PGSPEAVTLA HWICQSYRRV DLALWSDLLR 720 SDSLVGDMML KQLWHHQDAI LCCSLKSLPV FIFANQAGLD MLETTLVALQ DITLDKIFDE 780 AGRKALCTDF AKLMEQGFAY LPAGICMSTM GRHVSYDQAI AWKVLTGEDN TVHCLAFSFI 840 NWSFV |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of interfascicular fiber (cortical cells) and secondary xylem differentiation in the inflorescence stems. Required for lateral shoot meristems (LSMs) and flower meristems (FMs) initiation. May be involved in the determination of vascular patterning and organ polarity (PubMed:10559440, PubMed:11169198, PubMed:11402186, PubMed:15111711, PubMed:15598805, PubMed:7555701). Directly regulates the expression of AGO10, ZPR1, ZPR2, ZPR3 and ZPR4 (PubMed:22781836). Required to regulate adaxial-abaxial polarity and leaf axial patterning (PubMed:20807212). {ECO:0000269|PubMed:10559440, ECO:0000269|PubMed:11169198, ECO:0000269|PubMed:11402186, ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:20807212, ECO:0000269|PubMed:22781836, ECO:0000269|PubMed:7555701}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | KHN38761.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By auxin. Repressed by ZPR and miR165. Induced by DOF5.1 (PubMed:20807212). {ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:20807212}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003538150.1 | 0.0 | homeobox-leucine zipper protein REVOLUTA | ||||
Refseq | XP_028188862.1 | 0.0 | homeobox-leucine zipper protein REVOLUTA-like | ||||
Swissprot | Q9SE43 | 0.0 | REV_ARATH; Homeobox-leucine zipper protein REVOLUTA | ||||
TrEMBL | A0A445I377 | 0.0 | A0A445I377_GLYSO; Homeobox-leucine zipper protein REVOLUTA isoform A | ||||
TrEMBL | I1LL54 | 0.0 | I1LL54_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA11G20520.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6633 | 31 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G60690.1 | 0.0 | HD-ZIP family protein |