PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN38230.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 188aa    MW: 21454.6 Da    PI: 8.3026
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN38230.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY90.81.1e-28110168159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 +dDgy+WrKYG+K+vk++++ r+YY+C+s gC+vkk+ver+++d ++v++tYeg Hnhe
  KHN38230.1 110 MDDGYKWRKYGKKSVKSNPNLRNYYKCSSGGCSVKKRVERDRDDSSYVITTYEGVHNHE 168
                 59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.7E-3297170IPR003657WRKY domain
SuperFamilySSF1182901.31E-26102170IPR003657WRKY domain
PROSITE profilePS5081130.389105170IPR003657WRKY domain
SMARTSM007741.0E-31110169IPR003657WRKY domain
PfamPF031068.9E-23111168IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MDFYFGNPHP YPNIHQYHAH NSVVSMTPSS PEIALSDYLM LDDYVDHQDS RSSQSTESSE  60
KATFCDPTHG FSTGATSKNN NMKCKNGINE NKRGVGPRIA FRTKSELEIM DDGYKWRKYG  120
KKSVKSNPNL RNYYKCSSGG CSVKKRVERD RDDSSYVITT YEGVHNHESP FTTYYSPISF  180
VHSDTTFK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-24100170777Probable WRKY transcription factor 4
2lex_A4e-24100170777Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN38230.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0911580.0BT091158.1 Soybean clone JCVI-FLGm-7E8 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001235313.21e-140uncharacterized protein LOC100500248
RefseqXP_028233204.11e-140probable WRKY transcription factor 50
TrEMBLA0A445KQ761e-138A0A445KQ76_GLYSO; Putative WRKY transcription factor 51
TrEMBLI1K4R61e-138I1K4R6_SOYBN; Uncharacterized protein
STRINGGLYMA05G31800.11e-139(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF112034110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64810.11e-41WRKY DNA-binding protein 51
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]