PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN37806.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 274aa    MW: 31810.9 Da    PI: 7.5522
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN37806.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.66e-181663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++eEd++l+++v+ +G g+W+  +++ g++R +k+c++rw++yl
       KHN37806.1 16 RGAWSAEEDQILINYVQAHGEGNWRELSKRAGLKRRGKSCRLRWLNYL 63
                     89******************************99************97 PP
2Myb_DNA-binding51.13.2e-1669114148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ + +E++l+++++ +lG++ W++Ia +++ gRt++++k++w++yl
       KHN37806.1  69 RGNISSDEEDLIIRLHSLLGNR-WSLIAGRLP-GRTDNEIKNYWNTYL 114
                      78999*****************.*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.1511163IPR017930Myb domain
SMARTSM007172.2E-151565IPR001005SANT/Myb domain
SuperFamilySSF466891.5E-2915110IPR009057Homeodomain-like
PfamPF002491.0E-161663IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-231770IPR009057Homeodomain-like
CDDcd001676.12E-111863No hitNo description
PROSITE profilePS5129425.42164118IPR017930Myb domain
SMARTSM007171.7E-1568116IPR001005SANT/Myb domain
PfamPF002499.9E-1569114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-2471117IPR009057Homeodomain-like
CDDcd001673.81E-1073114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MKRKAMSCDN RDAVNRGAWS AEEDQILINY VQAHGEGNWR ELSKRAGLKR RGKSCRLRWL  60
NYLKPDIKRG NISSDEEDLI IRLHSLLGNR WSLIAGRLPG RTDNEIKNYW NTYLRKKTEH  120
KDKHNKILSH NNNIPIKLRI ESPQCSKNSS GNVLDPAKSP HPMRCTKVMM PVNDSVNTMN  180
LIATSWENHN PSASMPLDDH NHCLTGVLQD LDISDLLMSY EDDCRFNGYA CVEIPQHIFK  240
DETWRLDDSM GEEAWYENWK IDTYFPQDMG FSSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-261411825128MYB TRANSFORMING PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14753LKRRGKS
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH2/EGL3/MYC146, BHLH12/MYC1, or BHLH42/TT8. Involved in the control of flavonoid late metabolism in developing siliques. Plays a key role in determining the tissue-specific activation of leucoanthocyanidin reductase (BANYULS). {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN37806.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003535515.10.0transcription factor TT2
RefseqXP_028184166.10.0transcription factor TT2-like
SwissprotQ9FJA23e-53TT2_ARATH; Transcription factor TT2
TrEMBLA0A445IQ750.0A0A445IQ75_GLYSO; Transcription repressor MYB5
TrEMBLK7LKK00.0K7LKK0_SOYBN; Uncharacterized protein
STRINGGLYMA10G35061.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15511512
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.11e-55MYB family protein
Publications ? help Back to Top
  1. Coego A, et al.
    The TRANSPLANTA collection of Arabidopsis lines: a resource for functional analysis of transcription factors based on their conditional overexpression.
    Plant J., 2014. 77(6): p. 944-53
    [PMID:24456507]
  2. Liu C,Jun JH,Dixon RA
    MYB5 and MYB14 Play Pivotal Roles in Seed Coat Polymer Biosynthesis in Medicago truncatula.
    Plant Physiol., 2014. 165(4): p. 1424-1439
    [PMID:24948832]
  3. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  4. Zhu Z, et al.
    Characterization of the cis elements in the proximal promoter regions of the anthocyanin pathway genes reveals a common regulatory logic that governs pathway regulation.
    J. Exp. Bot., 2015. 66(13): p. 3775-89
    [PMID:25911741]
  5. Liu Y,Shi Z,Maximova SN,Payne MJ,Guiltinan MJ
    Tc-MYBPA an Arabidopsis TT2-like transcription factor and functions in the regulation of proanthocyanidin synthesis in Theobroma cacao.
    BMC Plant Biol., 2015. 15: p. 160
    [PMID:26109181]
  6. Bulgakov VP,Veremeichik GN,Grigorchuk VP,Rybin VG,Shkryl YN
    The rolB gene activates secondary metabolism in Arabidopsis calli via selective activation of genes encoding MYB and bHLH transcription factors.
    Plant Physiol. Biochem., 2016. 102: p. 70-9
    [PMID:26913794]
  7. Li Y, et al.
    Two IIIf Clade-bHLHs from Freesia hybrida Play Divergent Roles in Flavonoid Biosynthesis and Trichome Formation when Ectopically Expressed in Arabidopsis.
    Sci Rep, 2016. 6: p. 30514
    [PMID:27465838]
  8. Li C,Zhang B,Chen B,Ji L,Yu H
    Site-specific phosphorylation of TRANSPARENT TESTA GLABRA1 mediates carbon partitioning in Arabidopsis seeds.
    Nat Commun, 2018. 9(1): p. 571
    [PMID:29422671]