PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | KHN37002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | TALE | ||||||||
Protein Properties | Length: 387aa MW: 44461.4 Da PI: 6.9336 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.7 | 2.3e-09 | 314 | 349 | 20 | 55 |
HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 +k +yps++e+ LA+++gL+++q+ +WF N+R ++ KHN37002.1 314 YKWPYPSESEKVALAESTGLDQKQINNWFINQRKRH 349 5679*****************************885 PP | |||||||
2 | ELK | 37.8 | 4e-13 | 269 | 290 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK++LlrKYsgyL+sLkqE+s KHN37002.1 269 ELKNHLLRKYSGYLSSLKQELS 290 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 1.8E-19 | 126 | 170 | IPR005540 | KNOX1 |
Pfam | PF03790 | 7.5E-21 | 127 | 169 | IPR005540 | KNOX1 |
SMART | SM01256 | 4.3E-30 | 177 | 228 | IPR005541 | KNOX2 |
Pfam | PF03791 | 1.3E-24 | 181 | 227 | IPR005541 | KNOX2 |
Pfam | PF03789 | 2.7E-10 | 269 | 290 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 11.296 | 269 | 289 | IPR005539 | ELK domain |
SMART | SM01188 | 3.5E-7 | 269 | 290 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 12.989 | 289 | 352 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.33E-19 | 290 | 365 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 2.1E-13 | 291 | 356 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-27 | 294 | 355 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 3.05E-12 | 301 | 353 | No hit | No description |
Pfam | PF05920 | 1.1E-16 | 309 | 348 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 327 | 350 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 387 aa Download sequence Send to blast |
MEEYTNNNHL SENTGPSPST PRPNFLYSSA SGGNHNHNHH QHHSHHHHHQ FPINTFHLQS 60 GGSDHCFQSD QVSPHHSVKS EASTSQLHAP IFHYPLMRGN LHNTMHHHHP QQQQGGSPTS 120 STGEVEAIKA KIIAHPQYSN LLEAYMDCQK IGATPEVVAR MAAAKQEFEA RQRSSVGSRE 180 TSKDPELDQF MEAYYDMLVK YREELTRPIQ EAMDFMRRIE TQLNMLCNGP VRILSDDKCE 240 GAGSSEEDQD NSGGETELPE IDPRAEDREL KNHLLRKYSG YLSSLKQELS KKKKKGKLPK 300 DARQKLLNWW ELHYKWPYPS ESEKVALAES TGLDQKQINN WFINQRKRHW KPSEDMQFMV 360 MDGLHPQSAT LYMDGHYMAD GHYRLGQ |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably binds to the DNA sequence 5'-TGAC-3'. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | KHN37002.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HM107002 | 0.0 | HM107002.1 Glycine max KNOX-like DNA-binding protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003556963.2 | 0.0 | homeotic protein knotted-1 | ||||
Refseq | XP_028209109.1 | 0.0 | homeotic protein knotted-1-like | ||||
Swissprot | O04135 | 1e-175 | KNAP2_MALDO; Homeobox protein knotted-1-like 2 | ||||
TrEMBL | A0A445GAX4 | 0.0 | A0A445GAX4_GLYSO; Homeobox protein knotted-1-like 2 | ||||
TrEMBL | K7K0T9 | 0.0 | K7K0T9_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA0041S00360.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4584 | 32 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G08150.1 | 1e-147 | KNOTTED-like from Arabidopsis thaliana |
Publications ? help Back to Top | |||
---|---|---|---|
|