PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN36746.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | GRAS | ||||||||
Protein Properties | Length: 577aa MW: 64476.9 Da PI: 5.4658 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 429.1 | 3.4e-131 | 206 | 575 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 l++lL++cA+a+s+++++ ++l+ + ++ +s +g+p+qRl ay++e+L ar++ s++++y+al+++e + +e l++++l++e++P+lkf++++aN KHN36746.1 206 LKQLLIACAKALSENNTKDFDQLVGKAKDAVSINGEPIQRLGAYMVEGLVARMQASGNSIYHALRCREPE---GEELLTYMQLLFEICPYLKFGYMAAN 301 689******************************************************************9...9************************* PP GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196 aI +a +e+++HiiDf+i qG+QW++LlqaLa+Rp+g+p++RiTg+++p s+ + + le +g+rLa + e++g+p+ef+ v +++ e+L++ KHN36746.1 302 GAIAQACRNEDHIHIIDFQIAQGTQWMTLLQALAARPGGAPHVRITGIDDPVSKyaRGDGLEVVGKRLALMSEKFGIPVEFHG-VPVFAPNVTREMLDI 399 ***************************************************999999**************************.6888999******** PP GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295 +pgEalaVn+ lqlh++ desv+++++rd +L+lv+slsPkv ++veqe+++n+++F++rf+e+l+yy a+f+s++++lpr+s+eri+vE+++l+r+iv KHN36746.1 400 RPGEALAVNFPLQLHHTADESVHVSNPRDGLLRLVRSLSPKVTTLVEQESNTNTTPFFNRFIETLDYYLAIFESIDVTLPRDSKERINVEQHCLARDIV 498 *************************************************************************************************** PP GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 n++aceg+er+erhe ++kW++rl++aGF++ pls+++++ +++ll ++ + y++ e++g+++lgWkdr+L+s+SaW KHN36746.1 499 NIIACEGKERVERHELFGKWKSRLTMAGFRQCPLSSYVNSVIRSLLMCYS-EHYTLVEKDGAMLLGWKDRNLISASAW 575 **********************************************8777.66************************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 65.112 | 180 | 557 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.2E-128 | 206 | 575 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 577 aa Download sequence Send to blast |
MPSSFSMDSQ QLFSFELPYM SSLPTVPSLL GSLKYDTGNS PNSPFSTYFD SDTLSALSDG 60 QEQYSPGEIL SGVSPSCNSS LETNHYMYRS VSTLDSFPLY SDRNSLLQTM SSNQKIQHAL 120 LELETALMAP DDDQVNTPNT LAESSRPMAS GQRSRSWSNE NHVSQYTQTQ PSYATANMQS 180 SEVVHVEKRQ KLMEEATLQD FPPNNLKQLL IACAKALSEN NTKDFDQLVG KAKDAVSING 240 EPIQRLGAYM VEGLVARMQA SGNSIYHALR CREPEGEELL TYMQLLFEIC PYLKFGYMAA 300 NGAIAQACRN EDHIHIIDFQ IAQGTQWMTL LQALAARPGG APHVRITGID DPVSKYARGD 360 GLEVVGKRLA LMSEKFGIPV EFHGVPVFAP NVTREMLDIR PGEALAVNFP LQLHHTADES 420 VHVSNPRDGL LRLVRSLSPK VTTLVEQESN TNTTPFFNRF IETLDYYLAI FESIDVTLPR 480 DSKERINVEQ HCLARDIVNI IACEGKERVE RHELFGKWKS RLTMAGFRQC PLSSYVNSVI 540 RSLLMCYSEH YTLVEKDGAM LLGWKDRNLI SASAWHC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 7e-64 | 213 | 575 | 25 | 377 | Protein SCARECROW |
5b3h_D | 7e-64 | 213 | 575 | 25 | 377 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN36746.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015040 | 0.0 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003543283.1 | 0.0 | chitin-inducible gibberellin-responsive protein 1 | ||||
Refseq | XP_028191541.1 | 0.0 | chitin-inducible gibberellin-responsive protein 1-like | ||||
Swissprot | Q69VG1 | 0.0 | CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1 | ||||
TrEMBL | A0A445IBE0 | 0.0 | A0A445IBE0_GLYSO; Chitin-inducible gibberellin-responsive protein 1 isoform A | ||||
TrEMBL | I1M3G4 | 0.0 | I1M3G4_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA13G36120.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4299 | 33 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50600.1 | 1e-174 | scarecrow-like 5 |
Publications ? help Back to Top | |||
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