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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN36546.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB_related | ||||||||
Protein Properties | Length: 37aa MW: 4291.85 Da PI: 9.1197 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22 | 3.9e-07 | 3 | 29 | 17 | 45 |
HHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 17 kqlGggtWktIartmgkgRtlkqcksrwq 45 k+ G + W+ Ia +++ gRt++++ +w KHN36546.1 3 KLVGER-WSIIAGRIP-GRTAEEIEKYWT 29 566878.*********.***********5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.372 | 1 | 36 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.07E-6 | 2 | 32 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.0E-9 | 2 | 30 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 0.00136 | 8 | 28 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 37 aa Download sequence Send to blast |
MYKLVGERWS IIAGRIPGRT AEEIEKYWTS RFSGSSE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN36546.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP238114 | 1e-37 | KP238114.1 Lablab purpureus caprice and triptychon-like enhancer transcript variant X1 (etcl1) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006593492.1 | 2e-19 | MYB transcription factor MYB172 isoform X1 | ||||
Refseq | XP_028189654.1 | 2e-19 | MYB-like transcription factor ETC1 | ||||
TrEMBL | A0A0R0GWD9 | 4e-18 | A0A0R0GWD9_SOYBN; Uncharacterized protein | ||||
TrEMBL | A0A445IC97 | 4e-18 | A0A445IC97_GLYSO; MYB-like transcription factor ETC1 | ||||
STRING | GLYMA12G32130.3 | 2e-18 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01380.1 | 4e-15 | MYB_related family protein |