PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN36489.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 488aa    MW: 55227.1 Da    PI: 7.4773
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN36489.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM158.43e-49181441128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 
                 + pGfrF Ptdeel+++yL+kk+eg++ ++ +vi+ev+++k+ePwdLp k++ ++++ew+fFs+r +ky++g++++rat+ gyWkatgk+++v+s +++
  KHN36489.1  18 MFPGFRFCPTDEELISYYLRKKLEGHEESV-QVISEVELCKYEPWDLPaKSFIQSDNEWFFFSPRGRKYPNGSQSKRATECGYWKATGKERNVKS-GSN 114
                 579************************988.99***************667777899**************************************.99* PP

         NAM  99 lvglkktLvfykgrapkgektdWvmheyrl 128
                  +g+k+tLvf+ grapkge+t+W+mhey +
  KHN36489.1 115 IIGTKRTLVFHLGRAPKGERTEWIMHEYCI 144
                 ****************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.28E-5510159IPR003441NAC domain
PROSITE profilePS5100553.69718160IPR003441NAC domain
PfamPF023656.1E-2620143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0033619Biological Processmembrane protein proteolysis
GO:0048573Biological Processphotoperiodism, flowering
GO:0071472Biological Processcellular response to salt stress
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MMEGVSREAQ MSIAASSMFP GFRFCPTDEE LISYYLRKKL EGHEESVQVI SEVELCKYEP  60
WDLPAKSFIQ SDNEWFFFSP RGRKYPNGSQ SKRATECGYW KATGKERNVK SGSNIIGTKR  120
TLVFHLGRAP KGERTEWIMH EYCINDKSQE SLVICRLKRN TEFRLSDASN RASSSQRHPV  180
NSHESGCAIS GGGIDQRDAC EQDKEVGCSS KRDSSSYGSP SMEQIDSVSE SNQRPVNEAT  240
FTESSGQPKE GYEEDCYAEI LKDDIIKLDE SSILVESHTR PQDPTQMQPA PQGTAQRRIR  300
LRVGNSKHSR AVVRFPSTMH SSKNTFFART TNSLVFEWKQ QLVADVDSNP NLPQKQHQIS  360
KAEETVKEKK GSSIEKERDN RILSMSTLSL PSIYLAPLAS LKIPVKTLPP MLNFDLAPIE  420
RASSTSLGLL NYEIILVQEK NIRRLNELVR HLQEQLQQCR GRNGTINGTV SPLAERILEL  480
ERQQILED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-441715916164NO APICAL MERISTEM PROTEIN
1ut4_B4e-441715916164NO APICAL MERISTEM PROTEIN
1ut7_A4e-441715916164NO APICAL MERISTEM PROTEIN
1ut7_B4e-441715916164NO APICAL MERISTEM PROTEIN
3swm_A4e-441715919167NAC domain-containing protein 19
3swm_B4e-441715919167NAC domain-containing protein 19
3swm_C4e-441715919167NAC domain-containing protein 19
3swm_D4e-441715919167NAC domain-containing protein 19
3swp_A4e-441715919167NAC domain-containing protein 19
3swp_B4e-441715919167NAC domain-containing protein 19
3swp_C4e-441715919167NAC domain-containing protein 19
3swp_D4e-441715919167NAC domain-containing protein 19
4dul_A4e-441715916164NAC domain-containing protein 19
4dul_B4e-441715916164NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP), probably via metalloprotease activity. Regulates gibberellic acid-mediated salt-responsive repression of seed germination and flowering via FT, thus delaying seed germination under high salinity conditions. {ECO:0000269|PubMed:17410378, ECO:0000269|PubMed:18363782, ECO:0000269|PubMed:19704528, ECO:0000269|PubMed:19704545}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00280DAPTransfer from AT2G27300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN36489.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high salt stress (PubMed:19704545, PubMed:17410378, PubMed:18363782, PubMed:19704528). Repressed by gibberellic acid (GA), but induced by the GA biosynthetic inhibitor paclabutrazol (PAC) (PubMed:18363782). Accumulates transiently in seeds upon imbibition (PubMed:19704545, PubMed:17410378, PubMed:18363782, PubMed:19704528). Induced by drought stress (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:17410378, ECO:0000269|PubMed:18363782, ECO:0000269|PubMed:19704528, ECO:0000269|PubMed:19704545}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150401e-100AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028186647.10.0NAC domain-containing protein 40-like
SwissprotQ9XIN79e-96NAC40_ARATH; NAC domain-containing protein 40
TrEMBLA0A445ICP10.0A0A445ICP1_GLYSO; NAC domain-containing protein 40
STRINGGLYMA13G39090.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF73153346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27300.14e-98NTM1-like 8
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  2. Liang M, et al.
    Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana.
    Traffic, 2015. 16(10): p. 1062-74
    [PMID:26201836]
  3. Tian H, et al.
    NTL8 Regulates Trichome Formation in Arabidopsis by Directly Activating R3 MYB Genes TRY and TCL1.
    Plant Physiol., 2017. 174(4): p. 2363-2375
    [PMID:28649093]