PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN36350.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bHLH | ||||||||
Protein Properties | Length: 214aa MW: 24698.8 Da PI: 8.0808 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 43.5 | 5.9e-14 | 115 | 161 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P + K Ka++L + +eY+ksLq KHN36350.1 115 VHNLSERRRRDRINEKMKALQELIPRC-----NKSGKASMLDEPIEYLKSLQ 161 6*************************8.....5888999************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.01E-16 | 109 | 166 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.431 | 111 | 160 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.73E-14 | 114 | 164 | No hit | No description |
Pfam | PF00010 | 1.6E-11 | 115 | 161 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 8.5E-18 | 115 | 165 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.0E-13 | 117 | 166 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MRFFLCLHLT TLQSSILPSF LQLHCTEFLD LHFGNFHLLI GFFFSLNFMH VLSCVLMLLG 60 FTDLIAAFFE YSWVWVVGSE FVQKYVGEDV DFESPEAKKQ VRGSTSTKRS HAAEVHNLSE 120 RRRRDRINEK MKALQELIPR CNKSGKASML DEPIEYLKSL QLQVTVDASL QIPSVQVGLK 180 HFSDVVRTRS PIPCVNQCHY CIQIYNAFTL KVLF |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 119 | 124 | ERRRRD |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN36350.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT031114 | 1e-111 | KT031114.1 Glycine max clone HN_CCL_148 bHLH transcription factor (Glyma10g04890.2) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014623005.1 | 1e-77 | transcription factor PIF1 isoform X2 | ||||
TrEMBL | A0A0B2RTG4 | 1e-158 | A0A0B2RTG4_GLYSO; Transcription factor PIF1 | ||||
STRING | GLYMA02G19000.1 | 5e-77 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4607 | 33 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20180.1 | 3e-32 | phytochrome interacting factor 3-like 5 |
Publications ? help Back to Top | |||
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