PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN36348.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | NAC | ||||||||
Protein Properties | Length: 369aa MW: 41067.4 Da PI: 6.7434 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 172.4 | 1.3e-53 | 19 | 144 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 lppGfrFhPtdeelvv+yLkkkv++ +l++ ++i++vd+yk++Pw+Lp++++ + +ewyfFs+r++ky++g r+nra++sgyWkatg+dk+++s ++++ KHN36348.1 19 LPPGFRFHPTDEELVVHYLKKKVDSVPLPV-SIIADVDLYKFDPWELPAMASFGAEEWYFFSPRERKYPNGARPNRAATSGYWKATGTDKPICS-GTQK 115 79****************************.89***************88788999**************************************.999* PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 vg+kk+Lvfy g+ pkg+ktdW+mheyr+ KHN36348.1 116 VGVKKSLVFYGGKPPKGVKTDWIMHEYRV 144 ***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.05E-65 | 10 | 178 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.521 | 19 | 178 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.5E-28 | 20 | 144 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 369 aa Download sequence Send to blast |
MESTEDSSTS SQQQQQPNLP PGFRFHPTDE ELVVHYLKKK VDSVPLPVSI IADVDLYKFD 60 PWELPAMASF GAEEWYFFSP RERKYPNGAR PNRAATSGYW KATGTDKPIC SGTQKVGVKK 120 SLVFYGGKPP KGVKTDWIMH EYRVAENKPN NRPPGCDLGH KKNSLRLDDW VLCRIYKKGN 180 TQRSHERDDS MDDMIGEVPP SINVGHMNAR FHLSKMSTSY SGALLENDRN TLEGVVIGNG 240 NVNGINTNSI NAISSSSSHH QFASSNSKAE LLPFAPSNNN TSNSASKRTL SSLYWNVDDD 300 NDDDDHKHFN LDSNGNVSVL RTEENNNNTN GTSGSFATLL NQLPQTPSLP QIDGLLRTPY 360 QIQGTNWYG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 4e-72 | 14 | 180 | 10 | 170 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN36348.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By Jasmonic acid (JA). {ECO:0000269|PubMed:16805732}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF657306 | 0.0 | KF657306.1 Glycine max NAC transcription factor (SNAC41) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028237742.1 | 0.0 | NAC transcription factor 56-like | ||||
Swissprot | Q9LD44 | 1e-110 | NAC56_ARATH; NAC transcription factor 56 | ||||
TrEMBL | A0A0B2RV80 | 0.0 | A0A0B2RV80_GLYSO; NAC domain-containing protein 18 | ||||
STRING | GLYMA12G22790.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1623 | 34 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15510.1 | 1e-104 | NAC domain containing protein 2 |
Publications ? help Back to Top | |||
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