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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN36110.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ZF-HD | ||||||||
Protein Properties | Length: 319aa MW: 35762.8 Da PI: 8.4035 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 104.7 | 5.8e-33 | 106 | 161 | 3 | 59 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 ++rY+eCl+NhAas+G+h+vDGCgEfm+s geegt+++l+CaAC+CHR+FHR+eve KHN36110.1 106 SIRYRECLRNHAASMGSHVVDGCGEFMAS-GEEGTPESLRCAACECHRSFHRKEVEG 161 689*************************9.999*********************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 3.6E-30 | 107 | 159 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 2.4E-29 | 108 | 159 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 7.0E-21 | 108 | 161 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.188 | 109 | 158 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 7.9E-27 | 244 | 313 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.98E-17 | 247 | 311 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 3.7E-25 | 253 | 310 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 319 aa Download sequence Send to blast |
MAMRGQQDKE IEIPTTTTTT LGYNLLPNRD SSSSSSKLSS PTVGERSSSD HDHQTHTLIF 60 NETPHHNLYP PPPSLAPPQP QRPTLDPDLS TPIAPTSNPP RTSTPSIRYR ECLRNHAASM 120 GSHVVDGCGE FMASGEEGTP ESLRCAACEC HRSFHRKEVE GELQPQSLPQ QHVPNYHSYY 180 TNKHNGHFHY PTPSSSSLHH RLVATTTATP SLVPPVMMAF GGPAESSSED LINNTGAQLS 240 VQQQAPLTHS SNKKRFRTKF SQHQKDRMME FADKIDWKIQ KHNEQEVQHF CSQVGVKRQV 300 FKVWMHNNKQ TSSSKKQQM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 4e-20 | 254 | 314 | 18 | 78 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00268 | DAP | Transfer from AT2G18350 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN36110.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT095811 | 0.0 | BT095811.1 Soybean clone JCVI-FLGm-19N6 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028242219.1 | 0.0 | zinc-finger homeodomain protein 6-like | ||||
Swissprot | Q9ZPW7 | 7e-63 | ZHD6_ARATH; Zinc-finger homeodomain protein 6 | ||||
TrEMBL | A0A445M4Q6 | 0.0 | A0A445M4Q6_GLYSO; Zinc-finger homeodomain protein 6 | ||||
STRING | GLYMA01G37993.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF206 | 34 | 253 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18350.1 | 3e-62 | homeobox protein 24 |
Publications ? help Back to Top | |||
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