PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN35711.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | TALE | ||||||||
Protein Properties | Length: 351aa MW: 39812.1 Da PI: 6.8647 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.9 | 2e-09 | 277 | 313 | 19 | 55 |
HHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 19 FeknrypsaeereeLAkklgLterqVkvWFqNrRake 55 +k +yps++++ LA+++gL+++q+ +WF N+R ++ KHN35711.1 277 HYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRH 313 45679*****************************885 PP | |||||||
2 | ELK | 38.2 | 2.9e-13 | 233 | 253 | 1 | 21 |
ELK 1 ELKhqLlrKYsgyLgsLkqEF 21 ELK qLlrKY+gyLgsLkqEF KHN35711.1 233 ELKGQLLRKYRGYLGSLKQEF 253 9*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 3.6E-20 | 102 | 146 | IPR005540 | KNOX1 |
Pfam | PF03790 | 4.7E-22 | 103 | 142 | IPR005540 | KNOX1 |
SMART | SM01256 | 9.9E-24 | 145 | 196 | IPR005541 | KNOX2 |
Pfam | PF03791 | 5.6E-21 | 149 | 195 | IPR005541 | KNOX2 |
SMART | SM01188 | 5.9E-7 | 233 | 254 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 11.139 | 233 | 253 | IPR005539 | ELK domain |
Pfam | PF03789 | 5.4E-9 | 233 | 253 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 13.167 | 253 | 316 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.2E-12 | 255 | 320 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.8E-19 | 255 | 331 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.5E-28 | 258 | 318 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.17E-12 | 265 | 317 | No hit | No description |
Pfam | PF05920 | 6.2E-17 | 273 | 312 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 291 | 314 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 351 aa Download sequence Send to blast |
MEGVISSKGM GFGENTSSSG VCPMMMMPLV TSHHVGHHPL NHPILNNPNP NEHTNTLFLP 60 MPCTNNNHHP NRNNHNSNAT ELGYFMEIPN NNNDGSSSSP SSAVKAKIMA HPHYHRLLAA 120 YVNCQKVGAP PEVVGRLEEA CASAAVIMAG EDPALDQFME AYCEMLIKYE QELSKPFKEA 180 MLFLQRIECQ FKSLTISSSL DTTACNEAID RNGPSEDVDV QTNIIDPQAE DQELKGQLLR 240 KYRGYLGSLK QEFTKKRKKG KLPKEARQQL LEWWSRHYKW PYPSESQKLA LAESTGLDQK 300 QINNWFINQR KRHWKPSEDM QFVVVDPSHP HYYMENVLGN PFPMDLSHPM L |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 248 | 257 | LKQEFTKKRK |
2 | 254 | 258 | KKRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Possible transcription activator involved in early embryonic development. Probably binds to the DNA sequence 5'-TGAC-3'. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN35711.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ857339 | 0.0 | DQ857339.1 Glycine max KNT1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001237352.1 | 0.0 | KNT1 | ||||
Refseq | XP_028241890.1 | 0.0 | homeobox protein SBH1-like | ||||
Swissprot | P46608 | 1e-160 | HSBH1_SOYBN; Homeobox protein SBH1 | ||||
TrEMBL | A0A0B2RMF6 | 0.0 | A0A0B2RMF6_GLYSO; Homeobox protein SBH1 | ||||
STRING | GLYMA07G39350.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2039 | 34 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62360.1 | 1e-129 | KNOX/ELK homeobox transcription factor |
Publications ? help Back to Top | |||
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