PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

bZIP

Protein Properties

Length: 468aa MW: 51706.6 Da PI: 6.365

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN35294.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31	5.4e-10	181	223	3	45
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 + k rr+++NReAAr+sR+RKka++++Le +L++ ++L KHN35294.1 181 DQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQEL 223 568899************************9777776666555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	6.0E-8	173	225	No hit	No description
SMART	SM00338	2.1E-7	179	242	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.415	181	225	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	7.7E-7	183	223	IPR004827	Basic-leucine zipper domain
CDD	cd14708	1.12E-21	183	235	No hit	No description
SuperFamily	SSF57959	7.5E-7	183	226	No hit	No description
PROSITE pattern	PS00036	0	186	201	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	7.6E-33	265	340	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 468 aa Download sequence Send to blast
MGSRTTRRVV GVEDDKGAER GMPSSNSELP ISNSCYTEES TIDSFHVSDF GAFDQSYRIG 60 DAVDLSGNPV YNSLKVNSQT ISPGSVHISS LGQLPTSLEK SPLTNQIEPH RLRLQKVQSS 120 NPGTILVGNT DNQEESAMAD ASPRTDISTD GDTDDKNQPY DRNEALAAVS DSSDRSKDKS 180 DQKTLRRLAQ NREAARKSRL RKKAYVQQLE SSRLKLTQLE QELQRARQHG IFISSSGDQA 240 HTLSGNGAMQ FDAEYARWLE EQNRQINELK AAVNSHASDT ELRMIVDGIL AHYDEIFRLK 300 GVAAKADVFH LLSGMWKTPA ERCFLWLGGF RSSELLKLLV SQLEPLTEQQ LMGITNLQQS 360 SQQAEDALSQ GMEALQQSLA ETLSTGAPAS SGSSGNVANY MGQMAMAMGK LGTLEGFIQQ 420 ADNLRQQTLQ QMHRILTTRQ SARALLAIHD YFSRLRALSS LWLARPRD

Sequence ? help Back to Top

Protein Sequence Length: 468 aa Download sequence Send to blast

MGSRTTRRVV GVEDDKGAER GMPSSNSELP ISNSCYTEES TIDSFHVSDF GAFDQSYRIG  60
DAVDLSGNPV YNSLKVNSQT ISPGSVHISS LGQLPTSLEK SPLTNQIEPH RLRLQKVQSS  120
NPGTILVGNT DNQEESAMAD ASPRTDISTD GDTDDKNQPY DRNEALAAVS DSSDRSKDKS  180
DQKTLRRLAQ NREAARKSRL RKKAYVQQLE SSRLKLTQLE QELQRARQHG IFISSSGDQA  240
HTLSGNGAMQ FDAEYARWLE EQNRQINELK AAVNSHASDT ELRMIVDGIL AHYDEIFRLK  300
GVAAKADVFH LLSGMWKTPA ERCFLWLGGF RSSELLKLLV SQLEPLTEQQ LMGITNLQQS  360
SQQAEDALSQ GMEALQQSLA ETLSTGAPAS SGSSGNVANY MGQMAMAMGK LGTLEGFIQQ  420
ADNLRQQTLQ QMHRILTTRQ SARALLAIHD YFSRLRALSS LWLARPRD

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN35294.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT096311	0.0	BT096311.1 Soybean clone JCVI-FLGm-25J1 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003546706.1	0.0	transcription factor TGA6 isoform X2
Refseq	XP_006598095.1	0.0	transcription factor TGA6 isoform X2
Refseq	XP_028203278.1	0.0	transcription factor TGA6-like isoform X2
Refseq	XP_028203279.1	0.0	transcription factor TGA6-like isoform X2
Swissprot	Q6IVC2	0.0	TGAL1_ORYSJ; Transcription factor TGAL1
TrEMBL	A0A0B2RSU5	0.0	A0A0B2RSU5_GLYSO; TGACG-sequence-specific DNA-binding protein TGA-2.1
TrEMBL	K7MDC5	0.0	K7MDC5_SOYBN; Uncharacterized protein
STRING	GLYMA13G26280.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1470	34	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12250.2	1e-165	TGACG motif-binding factor 6

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709] Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933]