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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN35197.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 686aa MW: 75294.3 Da PI: 6.4555 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.1 | 1.4e-18 | 17 | 72 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++ +++t+ q+ee+e++F++ ++p+ ++r+eL+++lgL+ qVk+WFqN+R+++k KHN35197.1 17 KKGYRRHTQRQIEEMEAFFKQFPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 72 577889***********************************************999 PP | |||||||
2 | START | 211.1 | 4.1e-66 | 204 | 424 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEEC CS START 1 elaeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevis 86 ela +a++el ++a+a++p+Wv s e++n++e+l++f+ + ++ea+r+s+vv+m++ +l +l+d++ qW++ + +a tlev+s KHN35197.1 204 ELAVAAMEELTRLAQAGDPLWVPSNhhsEILNEEEYLRTFPNRGLgpkplgLRSEASRESVVVIMNHINLIDILMDVN-QWSTVFCgivsRALTLEVLS 301 57899***********************************77666*********************************.******99999********* PP TT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXH CS START 87 sg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlph 178 +g galq+m++e+q++splvp R+ +fvRy++q+++g w++vdvS+d+ ++++ + R++++pSg+li++++ng+skvtw+ehv++++r +h KHN35197.1 302 TGvagnynGALQVMSSEFQVPSPLVPtRENYFVRYCKQQPDGIWAVVDVSLDNLRPNT----ISRSRRRPSGCLIQELPNGYSKVTWIEHVEVDDRAVH 396 *********************************************************9....69*********************************** PP HHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 179 wllrslvksglaegaktwvatlqrqcek 206 +++r+lv+sgla+gak+wvatl+rqce+ KHN35197.1 397 SIYRPLVNSGLAFGAKRWVATLDRQCER 424 **************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.5E-20 | 5 | 72 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.3E-17 | 6 | 74 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.536 | 14 | 74 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.7E-17 | 16 | 78 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.94E-17 | 17 | 75 | No hit | No description |
Pfam | PF00046 | 4.7E-16 | 17 | 72 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 49 | 72 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 45.407 | 195 | 427 | IPR002913 | START domain |
SuperFamily | SSF55961 | 3.98E-37 | 196 | 426 | No hit | No description |
CDD | cd08875 | 3.99E-124 | 199 | 423 | No hit | No description |
SMART | SM00234 | 1.3E-68 | 204 | 424 | IPR002913 | START domain |
Pfam | PF01852 | 7.0E-56 | 205 | 424 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 7.7E-6 | 306 | 424 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 2.0E-24 | 445 | 675 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009845 | Biological Process | seed germination | ||||
GO:0009913 | Biological Process | epidermal cell differentiation | ||||
GO:0048825 | Biological Process | cotyledon development | ||||
GO:0090627 | Biological Process | plant epidermal cell differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 686 aa Download sequence Send to blast |
MDAPSGDDQD PNPRPKKKGY RRHTQRQIEE MEAFFKQFPH PDDKQRKELS RELGLEPLQV 60 KFWFQNKRTQ MKTQHERNEN AILKTENEKL RAENNRYKEA LSNATCPNCG GSAALGEMSF 120 DEQHLRIENA RLREEIDRIS GIAAKYVGKP VTSSYSNLSS LNNNHVPVGK YGSQSGTVGE 180 MYGGSDLFRS LPAPADADKP MIVELAVAAM EELTRLAQAG DPLWVPSNHH SEILNEEEYL 240 RTFPNRGLGP KPLGLRSEAS RESVVVIMNH INLIDILMDV NQWSTVFCGI VSRALTLEVL 300 STGVAGNYNG ALQVMSSEFQ VPSPLVPTRE NYFVRYCKQQ PDGIWAVVDV SLDNLRPNTI 360 SRSRRRPSGC LIQELPNGYS KVTWIEHVEV DDRAVHSIYR PLVNSGLAFG AKRWVATLDR 420 QCERLASSMA NNIPAGDLCV ITSAEGRKSM MKLAERMVMS YCTGVGASTA HAWTTLSATG 480 CDDVRVMTRK STDEPGRPPG IVLSAATSFW LPVPPNRVFD FLRDENSRNE WDILSNGGLV 540 QELAHIANGR DPGNCVSLLR VNSANSSQSN MLILQESCTD STGSYVVYAP VDIVAMNVVL 600 SGGDPDYVAL LPSGFAILPD GPPALNGGPM HEVGSGGSLL TVGFQILVDS APTAKLSLGS 660 VATVNSLIKC TVERIKVAVI RDNNNT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in cell specification and pattern formation during embryogenesis. Binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to PDF2. {ECO:0000269|PubMed:11439135, ECO:0000269|PubMed:12505995}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN35197.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 1e-157 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003538765.1 | 0.0 | homeobox-leucine zipper protein MERISTEM L1 | ||||
Refseq | XP_006590391.1 | 0.0 | homeobox-leucine zipper protein MERISTEM L1 | ||||
Refseq | XP_028188835.1 | 0.0 | homeobox-leucine zipper protein MERISTEM L1-like | ||||
Refseq | XP_028188836.1 | 0.0 | homeobox-leucine zipper protein MERISTEM L1-like | ||||
Swissprot | Q8RWU4 | 0.0 | ATML1_ARATH; Homeobox-leucine zipper protein MERISTEM L1 | ||||
TrEMBL | A0A445HV09 | 0.0 | A0A445HV09_GLYSO; Homeobox-leucine zipper protein MERISTEM L1 isoform A | ||||
TrEMBL | K7LMB0 | 0.0 | K7LMB0_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA11G00570.3 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1508 | 34 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21750.2 | 0.0 | HD-ZIP family protein |