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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN34991.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | TALE | ||||||||
Protein Properties | Length: 279aa MW: 31898.1 Da PI: 6.8476 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 23.7 | 8.2e-08 | 228 | 261 | 21 | 54 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp+++++++L +++gL+ +q+ +WF N+R + KHN34991.1 228 KWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 261 469*****************************87 PP | |||||||
2 | ELK | 25.6 | 2.9e-09 | 182 | 203 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK +L++++++++ ++++E++ KHN34991.1 182 ELKIELKQGFKSRIEDVREEIL 203 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 1.7E-19 | 18 | 62 | IPR005540 | KNOX1 |
Pfam | PF03790 | 1.2E-17 | 20 | 61 | IPR005540 | KNOX1 |
SMART | SM01256 | 8.8E-22 | 73 | 128 | IPR005541 | KNOX2 |
Pfam | PF03791 | 8.0E-17 | 76 | 127 | IPR005541 | KNOX2 |
PROSITE profile | PS51213 | 9.132 | 182 | 202 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.71 | 202 | 265 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.3E-11 | 204 | 269 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.87E-16 | 204 | 269 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 8.12E-12 | 205 | 266 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.7E-25 | 209 | 267 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 9.8E-18 | 222 | 261 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 279 aa Download sequence Send to blast |
MQEAGLGMMG EVSGDQHRQL KAEIATHPLY EQLLAAHVAC LRVATPIDQL PLIDAQLSQS 60 HHLLRSYVSH NTLSLSPHHR QELDNFLAQY LIVLCTFKEQ LQQHVRVHAV EAVMACRDIE 120 NTLQALTGVS LGEGTGATMS DDEDDLQMDF SLDQSSAEGH DMMGFGLPTE SERSLMERVR 180 QELKIELKQG FKSRIEDVRE EILRKRRAGK LPGDTTSVLK NWWQQHAKWP YPTEDDKAKL 240 VEETGLQLKQ INNWFINQRK RNWHSNSQSV TSLKSKRKR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1x2n_A | 9e-13 | 205 | 261 | 8 | 64 | Homeobox protein PKNOX1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 258 | 278 | RKRNWHSNSQSVTSLKSKRKR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May be involved in secondary cell wall biosynthesis. {ECO:0000269|PubMed:15980264}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN34991.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT095003 | 0.0 | BT095003.1 Soybean clone JCVI-FLGm-6F23 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003538444.1 | 0.0 | homeobox protein HD1 | ||||
Refseq | XP_028188931.1 | 0.0 | homeobox protein HD1-like | ||||
Swissprot | Q9FPQ8 | 1e-168 | KNAT7_ARATH; Homeobox protein knotted-1-like 7 | ||||
TrEMBL | A0A0R0HAW9 | 0.0 | A0A0R0HAW9_SOYBN; Uncharacterized protein | ||||
TrEMBL | A0A445HW43 | 0.0 | A0A445HW43_GLYSO; Homeobox protein knotted-1-like 7 isoform A | ||||
STRING | GLYMA11G02960.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6348 | 34 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62990.1 | 1e-171 | KNOTTED-like homeobox of Arabidopsis thaliana 7 |
Publications ? help Back to Top | |||
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