PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN34589.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family LBD
Protein Properties Length: 239aa    MW: 25830.9 Da    PI: 6.6132
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN34589.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260126.71.1e-39451461101
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                 +C aCk+lrrkC  +C++apyf+ +q ++kfa+vhk+FGasnv+kll+++p ++r++a++s+ yeA+ar++dPvyG+v++il+lqqq+ +l+aela+l+
  KHN34589.1  45 PCGACKFLRRKCIGGCIFAPYFCTDQgAAKFAAVHKVFGASNVSKLLSNIPANRRHEAATSISYEAQARLSDPVYGCVSTILALQQQVVSLQAELAMLQ 143
                 7*************************89*********************************************************************99 PP

      DUF260  99 eel 101
                 ++l
  KHN34589.1 144 TQL 146
                 875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.56544146IPR004883Lateral organ boundaries, LOB
PfamPF031959.3E-3945143IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MAEPQGDIGG DSGASGSKRR STVSKRGMVA QTQDEAIVGS SPATPCGACK FLRRKCIGGC  60
IFAPYFCTDQ GAAKFAAVHK VFGASNVSKL LSNIPANRRH EAATSISYEA QARLSDPVYG  120
CVSTILALQQ QVVSLQAELA MLQTQLMNSK FFYTSALQTT QLHQPNMNAA ALHPAYSNNS  180
CGSTNLLNLS NFNNTPSFDL AMDTTPSSHS LEPLQLTRLS QYEEEEEEES KTQQTFDHH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-384514811113LOB family transfactor Ramosa2.1
5ly0_B2e-384514811113LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN34589.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150441e-108AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028216232.11e-179LOB domain-containing protein 20-like
SwissprotQ9SRV33e-67LBD20_ARATH; LOB domain-containing protein 20
TrEMBLA0A445FFJ61e-178A0A445FFJ6_GLYSO; LOB domain-containing protein 20
STRINGGLYMA19G30200.21e-178(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77153146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.15e-52LOB domain-containing protein 20
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]