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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN34587.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | G2-like | ||||||||
Protein Properties | Length: 261aa MW: 28349.6 Da PI: 6.9037 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 105.9 | 2.4e-33 | 35 | 89 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt++LH+rFv+a++qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl KHN34587.1 35 KQRLRWTSDLHDRFVDAITQLGGPDRATPKGVLRVMGVPGLTIYHVKSHLQKYRL 89 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.884 | 32 | 92 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.5E-32 | 33 | 90 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.05E-17 | 34 | 89 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.0E-26 | 35 | 90 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.3E-7 | 37 | 88 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 8.9E-25 | 123 | 169 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MVPHKSQGGA EQLANAGVLG GSAVKTAAPS GGSGKQRLRW TSDLHDRFVD AITQLGGPDR 60 ATPKGVLRVM GVPGLTIYHV KSHLQKYRLA KYLPESPADG KDPKDEKRMS GDSISGADSS 120 SGMPINDALR MQMEVQKRLH EQLEVQKQLQ MRIEAQGKYL QKIIEEQQKL GSTLTTSETL 180 PLSHDKQNHP QSEASGSSDA LASTVSPLKK QRIDDGSKEG FTASQVRKND NVGQLDPNLY 240 DDAGFGFDLE TKKDEDNESG Q |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 1e-23 | 34 | 92 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 1e-23 | 34 | 92 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 1e-23 | 34 | 92 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 1e-23 | 34 | 92 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 1e-23 | 34 | 92 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 1e-23 | 34 | 92 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 1e-23 | 34 | 92 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 1e-23 | 34 | 92 | 1 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN34587.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ007311 | 0.0 | HQ007311.1 Glycine max cultivar Jidou11 MYB transcription factor (PHR1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001276140.2 | 0.0 | MYB-CC domain-containing transcription factor PHR30 | ||||
Refseq | XP_006604294.1 | 0.0 | MYB-CC domain-containing transcription factor PHR30 isoform X1 | ||||
Refseq | XP_028218691.1 | 0.0 | myb family transcription factor PHL7-like isoform X1 | ||||
Refseq | XP_028218692.1 | 0.0 | myb family transcription factor PHL7-like isoform X1 | ||||
Swissprot | Q9SJW0 | 1e-71 | PHL7_ARATH; Myb family transcription factor PHL7 | ||||
TrEMBL | A0A445FFF9 | 0.0 | A0A445FFF9_GLYSO; Myb family transcription factor PHL7 isoform B | ||||
TrEMBL | I1N8J6 | 0.0 | I1N8J6_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA19G30220.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13013 | 23 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01060.1 | 7e-64 | G2-like family protein |
Publications ? help Back to Top | |||
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