PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN34430.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 664aa    MW: 73719.4 Da    PI: 6.3903
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN34430.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS415.74.1e-1272756471373
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetsekn.sseelaalklfsevsPilkfshlt 97 
                 lv+lL+ c++a+ s++ +++++++a+l +lasp+g +++ R+ ayfteALa r++r +++++++ ++s+++++   +e+++al+l+++v+Pi+kf h+t
  KHN34430.1 275 LVSLLTGCVDAIGSRNVTAINHFIAKLGDLASPKGtTSISRICAYFTEALAIRVTRLWPHVFHITTTSTSRDMVeDDESATALRLLNQVTPIPKFLHFT 373
                 6899*******************************99**************************9999999988757778899999************** PP

        GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                  N+++l+a+eg++rvHiiDfdi+qGlQW  L+q+LasR+++p ++RiTg+g+    sk+ l+etgerLa fAe+l++pfef++ v++rled++l++L+v
  KHN34430.1 374 SNEMLLRAFEGKDRVHIIDFDIKQGLQWSGLFQSLASRSNPPTHVRITGIGE----SKQDLNETGERLAGFAEALNLPFEFHP-VVDRLEDVRLWMLHV 467
                 ****************************************************....9**************************.7************** PP

        GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpreseerikvErellgrei 294
                 k++E++aVn+vlqlh++l +    +   +++L l++s++P v+vv+eqea+hn++++  r++++l+yysalfds+ e++lp+es  r+k+E++  ++ei
  KHN34430.1 468 KEHETVAVNCVLQLHKTLYDGSGGA--LRDFLGLIRSTNPSVIVVAEQEAEHNENRLEGRVCNSLKYYSALFDSIdESGLPQESAVRVKIEEM-YAKEI 563
                 *****************95543333..589*********************************************999***************.899** PP

        GRAS 295 vnvvacegaerrerhetlekWrerl.eeaGFkpvplsekaakqaklllrkvksdgyrveee....sgslvlgWkdrpLvsvSaW 373
                 +n+vaceg+er+erhe++++Wr+++ e+ GF+ + ++e++ +q ++ll++++ + y+v+++       ++l W ++pL++vSaW
  KHN34430.1 564 RNIVACEGRERVERHESFGNWRRMMvEQGGFRCMGVTERELSQSQMLLKMYSCESYSVKKQekegATGVTLSWLEQPLYTVSAW 647
                 **********************99935589**********************999***955333344566************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098555.458249624IPR005202Transcription factor GRAS
PfamPF035141.4E-124275647IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 664 aa     Download sequence    Send to blast
MLAGCSSSTL LSPRHRLRSE ASAQFQACHF QLPSSMSTQR LDLPCTTTTF TRNNKDTTSS  60
RSVLSVDQKP IEAKTSTCSL KQHIRLPPLA ITAAPSPLVE DSIIKDNTNN NKSLKRLAAE  120
HQDDSFTNNI AKRKKKSSST ECDWFQPDVV GTTLGGFNNN NNNNNTSLAS FSSEEDRVCF  180
VPSEVVSHSA PFPLNPWLES CVTKITNFGE GSQRPHHHHH SDHASGSVSN ASSESQSLRL  240
NDNISEHEVG NGSGNPYYHH EVDTGEEDNH HGFELVSLLT GCVDAIGSRN VTAINHFIAK  300
LGDLASPKGT TSISRICAYF TEALAIRVTR LWPHVFHITT TSTSRDMVED DESATALRLL  360
NQVTPIPKFL HFTSNEMLLR AFEGKDRVHI IDFDIKQGLQ WSGLFQSLAS RSNPPTHVRI  420
TGIGESKQDL NETGERLAGF AEALNLPFEF HPVVDRLEDV RLWMLHVKEH ETVAVNCVLQ  480
LHKTLYDGSG GALRDFLGLI RSTNPSVIVV AEQEAEHNEN RLEGRVCNSL KYYSALFDSI  540
DESGLPQESA VRVKIEEMYA KEIRNIVACE GRERVERHES FGNWRRMMVE QGGFRCMGVT  600
ERELSQSQML LKMYSCESYS VKKQEKEGAT GVTLSWLEQP LYTVSAWGPV DAAAGTSSSF  660
SQPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-6628264925379Protein SCARECROW
5b3h_D2e-6628264925379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN34430.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028231641.10.0scarecrow-like protein 28
RefseqXP_028231642.10.0scarecrow-like protein 28
RefseqXP_028231644.10.0scarecrow-like protein 28
SwissprotQ9CAN30.0SCL28_ARATH; Scarecrow-like protein 28
TrEMBLA0A445KJD90.0A0A445KJD9_GLYSO; Scarecrow-like protein 28 isoform A
STRINGGLYMA05G03490.40.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91613244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.10.0GRAS family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]