PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN34302.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | NAC | ||||||||
Protein Properties | Length: 362aa MW: 41906.9 Da PI: 6.2548 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 179.5 | 8.4e-56 | 6 | 135 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 +ppGfrFhPtdeelv +yL+kkv+++k++l +vike+d+y++ePwdL++ ++ e++ewyfFs++dkky+tg+r+nrat +g+Wkatg+dk+v++ + KHN34302.1 6 VPPGFRFHPTDEELVGYYLRKKVASQKIDL-DVIKEIDLYRIEPWDLQEtyRIGYeEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKSVYE-R 102 69****************************.9***************953433333667**************************************.9 PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrle 129 ++l+g++ktLvfykgrap+g+ktdW+mheyrle KHN34302.1 103 TKLIGMRKTLVFYKGRAPNGQKTDWIMHEYRLE 135 99*****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.14E-58 | 3 | 155 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.243 | 6 | 155 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.0E-28 | 7 | 134 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 362 aa Download sequence Send to blast |
MMESCVPPGF RFHPTDEELV GYYLRKKVAS QKIDLDVIKE IDLYRIEPWD LQETYRIGYE 60 EQNEWYFFSH KDKKYPTGTR TNRATMAGFW KATGRDKSVY ERTKLIGMRK TLVFYKGRAP 120 NGQKTDWIMH EYRLETVENG PPQEEGWVVC RAFKKRTTNG QTKTIEGWHR NCLYDEQQQA 180 CGSVSSTVVD PNIDLMLRQQ PQRFSGAQNF MYKQEEIIEA DNNNLSFMHA EQQLVQLPHL 240 ESPSLPLAKK QSSVVSPISD NINNNEDDDN PQKGLSNTTK KVTTDWRALD KFVASQLSQE 300 ERHEIEGVSS FATHHTTTSS DMALLLLQNN SRENERNNKF NPFFNTSSTI SDCDIGICVF 360 EK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 7e-51 | 3 | 156 | 12 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN34302.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by chitin (e.g. chitooctaose) (PubMed:17722694). Accumulates in plants exposed to callus induction medium (CIM) (PubMed:17581762). {ECO:0000269|PubMed:17581762, ECO:0000269|PubMed:17722694}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT094162 | 1e-153 | BT094162.1 Soybean clone JCVI-FLGm-18C16 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028206734.1 | 0.0 | NAC domain-containing protein 105-like | ||||
Swissprot | Q9SL41 | 1e-139 | NAC37_ARATH; NAC domain-containing protein 37 | ||||
TrEMBL | A0A0B2RR73 | 0.0 | A0A0B2RR73_GLYSO; NAC domain-containing protein 37 | ||||
STRING | GLYMA16G24200.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4565 | 34 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18060.1 | 1e-134 | vascular related NAC-domain protein 1 |
Publications ? help Back to Top | |||
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