PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN34140.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | HSF | ||||||||
Protein Properties | Length: 464aa MW: 51846.8 Da PI: 4.6886 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 115.5 | 3.4e-36 | 15 | 107 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k+y++++d++++ ++sw en+nsfvv++ +fa+++Lp++Fkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F +g+k+ll++i KHN34140.1 15 FLSKTYDMVDDPSTDLVVSWGENNNSFVVWNVPQFATDILPNHFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGEKQLLKSIS 102 9****************************************************************999.........******************** PP XXXXX CS HSF_DNA-bind 99 rkkse 103 r+ks+ KHN34140.1 103 RRKSA 107 **986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 3.0E-57 | 11 | 104 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 4.8E-37 | 12 | 104 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 1.35E-32 | 12 | 104 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 2.7E-30 | 15 | 104 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 6.9E-19 | 15 | 38 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 6.9E-19 | 53 | 65 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 54 | 78 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 6.9E-19 | 66 | 78 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009408 | Biological Process | response to heat | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 464 aa Download sequence Send to blast |
MEGASWNSSV CVAPFLSKTY DMVDDPSTDL VVSWGENNNS FVVWNVPQFA TDILPNHFKH 60 NNFSSFVRQL NTYGFRKVDP DRWEFANEGF LRGEKQLLKS ISRRKSAHVN GSQQASQVHK 120 SAAGACVEVG KFGLEEEVER LKRDKNVLMQ ELVRLRQKQQ GTDNQLQNVG QRVQSMEQRQ 180 QQMMSFLAKA MQSPGFLAQF VQQQNESSKH IPGSNKKRRL QRQEEDSLAT KDLHSSLDGH 240 IVKYQSSINE AAKALFRQIL QINNSTTQSS IKNPDVFLID DIPSAIASDS SSSSTQVSNV 300 MVPPISELTS MEVGSQFPLS CMPSNISEVQ SSPAVLGFCR SQGMETESSL LNHELNVMGA 360 DTRNMGEIDM MSTVLDEADE ADHFSPDTDG ISKLPEISDE FWELFLRPSP LTEDTEETKC 420 SSLGCGLTED QGLPSEMGNK QENFDTIQHV DCLTQQMGLH ALEY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 4e-24 | 12 | 107 | 17 | 123 | Heat shock factor protein 1 |
5d5u_B | 5e-24 | 12 | 104 | 26 | 129 | Heat shock factor protein 1 |
5d5v_B | 5e-24 | 12 | 104 | 26 | 129 | Heat shock factor protein 1 |
5d5v_D | 5e-24 | 12 | 104 | 26 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00514 | DAP | Transfer from AT5G16820 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN34140.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: DNA-binding capacity is reduced by HSBP in vitro. {ECO:0000269|PubMed:20388662}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006573849.1 | 0.0 | heat stress transcription factor A-1b | ||||
Refseq | XP_028180107.1 | 0.0 | heat stress transcription factor A-1b-like | ||||
Swissprot | O81821 | 1e-140 | HFA1B_ARATH; Heat stress transcription factor A-1b | ||||
TrEMBL | A0A0B2RLS1 | 0.0 | A0A0B2RLS1_GLYSO; Heat stress transcription factor A-1b | ||||
TrEMBL | I1JAM5 | 0.0 | I1JAM5_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA01G44330.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1843 | 31 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16820.2 | 1e-123 | heat shock factor 3 |
Publications ? help Back to Top | |||
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