PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN33375.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 647aa    MW: 71504.6 Da    PI: 7.9427
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN33375.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.66e-08547596147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
       KHN33375.1 547 RRPFSVAEVEALVQAVEKLGTGRWRDVKLHAFdnaKHRTYVDLKDKWKTL 596
                      6789999***********************999**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542367.77E-8347438IPR029071Ubiquitin-related domain
PROSITE profilePS500538.502352422IPR000626Ubiquitin domain
PROSITE profilePS5129416.741542601IPR017930Myb domain
SMARTSM007177.2E-8546599IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-10547597IPR009057Homeodomain-like
CDDcd116601.47E-17548598No hitNo description
SuperFamilySSF466896.07E-16548629IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 647 aa     Download sequence    Send to blast
MVLQKRLDYS FYGYHVPTKR RATRSAKRRA TFQRRLEDNQ MCAFDLLATI ADNLLQEKQN  60
PTISSDRSSE KDRDGFSKVE CQDANKPFKT ELSDEASCDR KCQHEFVREG CPDANKPFKA  120
ELSDEGSSDR KCFSNISSQL YNQNCCLKEL LQHEIDGHSC IASIVTSSSC SEKIVAERLV  180
DGKGHNGVEN LASKVELGSS GCLESSGCKL DGDVSKVKDG KVGKVPIDTG TGMCCFEDPL  240
DEKPPALISS CGNAKMSGYD DSKPQSSLSK GCDNVLVDSR DDDENFSGYA HPSTKINSFK  300
QITCIDDRKI KKTLDSKYHK VSQESKHDIL SNSDHGTSSL GHSALRSRDS HVKLRIKSFR  360
VPELFIEIPE TATVGSLKRT VMEAVTAVLG GGLRVGVILH GKKVRDDSKT LLQTGISHDN  420
HLDALGFALE PNCSQNRSSA CATTDSLCVP GADMHQPLIG YPSSRAAIHQ RIQGFSNMLA  480
EHQATGLGNL VESDHDSAPS PINTSGEKNL TDSKELITVP EMGMEALAVL PVHQKSKRTE  540
IAPRRIRRPF SVAEVEALVQ AVEKLGTGRW RDVKLHAFDN AKHRTYVDLK DKWKTLVHTA  600
RISPQQRRGE PVPQELLDRV LTAHAYWSQQ QTKQQLKHHS TKPCLLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A2e-575316371107Telomere binding protein TBP1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN33375.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028187640.10.0telomere repeat-binding protein 3-like isoform X6
TrEMBLA0A445GNK70.0A0A445GNK7_GLYSO; Telomere repeat-binding protein 5 isoform A
TrEMBLI1MDE40.0I1MDE4_SOYBN; Uncharacterized protein
STRINGXP_004486994.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13562844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.15e-87TRF-like 2
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]