PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN33341.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | Trihelix | ||||||||
Protein Properties | Length: 447aa MW: 50841 Da PI: 6.1349 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 68.5 | 1.3e-21 | 116 | 212 | 1 | 85 |
trihelix 1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt.sessstcpyfdql 85 +Wt++ v++Li++++ ++++ g +kk++W+ vsk m +g+++sp+qC++k+++lnkryk+++++ +++t ++++++ ++ d++ KHN33341.1 116 KWTDNVVRLLITVVSCVGDDGTIGGmdchkrksgvlQKKGKWKTVSKIMIGKGCHVSPQQCEDKFNDLNKRYKRLNDILGRGTcCQVVENPVLMDSM 212 7**************888777765444466667777**********************************************857888888877777 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 6.0E-18 | 114 | 239 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 447 aa Download sequence Send to blast |
MNSSGLGGGF LSGPSGEILD LESPFHRQQH TQLGHPSITG QQHMNMMSGL ESDHPIGLIE 60 VKSLNAALNF GKGKAVAPSN SNELSEEDEP SYAEEGNCEN LDGGKSKKGS PWQRMKWTDN 120 VVRLLITVVS CVGDDGTIGG MDCHKRKSGV LQKKGKWKTV SKIMIGKGCH VSPQQCEDKF 180 NDLNKRYKRL NDILGRGTCC QVVENPVLMD SMPNLSAKMK DDVRKILSSK HLFYKEMCAY 240 HNGQRIPNSH ELDLQGYSLE HGRDSRDNNG SEDEDEDNND SEDDESDDEI NINAHEDGGR 300 MQQLCDRNKL SEEDVHFGPQ TSRMDKFEVE MARVFQDPTK SLHEQREWIK IQMLQLQEQN 360 ISYQAQALEL EKQRLKWLRY CSKKDRELEK LRLENKRMKL ENERRILKLK QKELEADFST 420 SEMSLDPASL GINRPQGREH ISLGRQQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN33341.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015040 | 0.0 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028202253.1 | 0.0 | uncharacterized protein LOC114386447 | ||||
TrEMBL | A0A445GNQ9 | 0.0 | A0A445GNQ9_GLYSO; Uncharacterized protein | ||||
STRING | GLYMA15G03850.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10546 | 32 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76870.1 | 1e-73 |
Publications ? help Back to Top | |||
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