PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

FAR1

Protein Properties

Length: 762aa MW: 88427.1 Da PI: 6.9327

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN33085.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	62.2	1.5e-19	43	117	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 kfY +YA+++GF+vr+ + ++s+++g++ +r+fvCskeg++ + +rt+C a ++v+ + +gkw+v++++++HnH+l KHN33085.1 43 KFYTSYANRTGFKVRIGQLYRSRTDGSVSSRRFVCSKEGHQLS--------------SRTDCPAFIRVQINGSGKWVVDHFHKDHNHNL 117 6************************************8765..............5899************************99 PP
2	FAR1	62.9	9.5e-20	199	274	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY++YA ++GF vr+ + +sk++g it+r+fvCskeg++++ r+gC a l++k++ +gkw v++l+++HnH+l KHN33085.1 199 QFYHAYAAHLGFGVRIGQLFRSKNDGLITSRRFVCSKEGFQHP--------------LRVGCGAYLRIKRQPSGKWTVDRLRKDHNHDLD 274 6*************************************998..............4899************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.5E-15	43	117	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	8.2E-16	199	274	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.4E-27	373	466	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.336	648	684	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	4.5E-8	657	681	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.0E-6	659	686	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 762 aa Download sequence Send to blast
MIVNEHSVGT ELAMNNASVE EEIDFSCDPY IGLEFDTADE ALKFYTSYAN RTGFKVRIGQ 60 LYRSRTDGSV SSRRFVCSKE GHQLSSRTDC PAFIRVQING SGKWVVDHFH KDHNHNLEIS 120 GENCSPTLQQ KGAGATVINS LTEFPRRPRR KLLEEANDES SCPFGIIDFK RLRKEELEGQ 180 SRTEPYVGQE FISPDEAYQF YHAYAAHLGF GVRIGQLFRS KNDGLITSRR FVCSKEGFQH 240 PLRVGCGAYL RIKRQPSGKW TVDRLRKDHN HDLDSEKEGR AKSLPASNIL AEEVDTGLVN 300 YDLFRRDNYP VPRGGRQNHI RSEWYGILLE YFQSRQAEDT GFFYAVEVDY GNCMNIFWAD 360 GRSRYSCSQF GDVLVLDTSY RKTVYLVPFA TFVGVNHHKQ PVLLGCALIA DESEESFTWL 420 FQTWLRAMSG RLPLTVIADQ DIAIQRAIAK VFPVTHHRFS LWQIKAKEQE NMGLMGNDFT 480 KDYENCVYQS QTVDEFDATW NVVLNKYGLK DNAWLKEMYE KRESWVPLYL KGTFFAGIPM 540 NESLDSFFGA LLNAQTPLME FIPRYERGLE QRREEERKED FNTSNFQPIL QTKEPVEEQF 600 RKLYTLTVFK IFQKELLQCF SYLGFKIFEE GGLSRYMVRR CGNDMEKHVV TFNASNISIS 660 CSCQMFEYEG VLCRHVLRVF QILQLREVPC RYILHRWTRN TEDGVFPDME SWSSSQELKN 720 LMLWSLRETA SKYIDAGATS IEKYKLAYEI LREGGRKLCW HR

Sequence ? help Back to Top

Protein Sequence Length: 762 aa Download sequence Send to blast

MIVNEHSVGT ELAMNNASVE EEIDFSCDPY IGLEFDTADE ALKFYTSYAN RTGFKVRIGQ  60
LYRSRTDGSV SSRRFVCSKE GHQLSSRTDC PAFIRVQING SGKWVVDHFH KDHNHNLEIS  120
GENCSPTLQQ KGAGATVINS LTEFPRRPRR KLLEEANDES SCPFGIIDFK RLRKEELEGQ  180
SRTEPYVGQE FISPDEAYQF YHAYAAHLGF GVRIGQLFRS KNDGLITSRR FVCSKEGFQH  240
PLRVGCGAYL RIKRQPSGKW TVDRLRKDHN HDLDSEKEGR AKSLPASNIL AEEVDTGLVN  300
YDLFRRDNYP VPRGGRQNHI RSEWYGILLE YFQSRQAEDT GFFYAVEVDY GNCMNIFWAD  360
GRSRYSCSQF GDVLVLDTSY RKTVYLVPFA TFVGVNHHKQ PVLLGCALIA DESEESFTWL  420
FQTWLRAMSG RLPLTVIADQ DIAIQRAIAK VFPVTHHRFS LWQIKAKEQE NMGLMGNDFT  480
KDYENCVYQS QTVDEFDATW NVVLNKYGLK DNAWLKEMYE KRESWVPLYL KGTFFAGIPM  540
NESLDSFFGA LLNAQTPLME FIPRYERGLE QRREEERKED FNTSNFQPIL QTKEPVEEQF  600
RKLYTLTVFK IFQKELLQCF SYLGFKIFEE GGLSRYMVRR CGNDMEKHVV TFNASNISIS  660
CSCQMFEYEG VLCRHVLRVF QILQLREVPC RYILHRWTRN TEDGVFPDME SWSSSQELKN  720
LMLWSLRETA SKYIDAGATS IEKYKLAYEI LREGGRKLCW HR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	146	150	RPRRK

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN33085.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015038	0.0	AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006597564.1	0.0	protein FAR1-RELATED SEQUENCE 7
Refseq	XP_028204716.1	0.0	protein FAR1-RELATED SEQUENCE 7-like
Swissprot	Q9M8J3	0.0	FRS7_ARATH; Protein FAR1-RELATED SEQUENCE 7
TrEMBL	A0A445GRG8	0.0	A0A445GRG8_GLYSO; Protein FAR1-RELATED SEQUENCE 7 isoform A
TrEMBL	I1MFB6	0.0	I1MFB6_SOYBN; Uncharacterized protein
STRING	GLYMA15G10830.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06250.1	0.0	FAR1-related sequence 7

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Ritter A, et al. The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis. Nat Commun, 2017. 8: p. 15235 [PMID:28492275] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]