PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN32188.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

WRKY

Protein Properties

Length: 175aa MW: 20169.1 Da PI: 6.2472

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN32188.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	87.9	8.7e-28	114	172	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDg +WrKYG+K+vk+s++pr+YYrC+ g +vkk+ver+++dp++v++tYeg H+h+ KHN32188.1 114 LDDGSKWRKYGKKMVKNSPNPRNYYRCSVDGWQVKKRVERDKDDPRFVITTYEGIHTHP 172 58********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	9.0E-30	101	173	IPR003657	WRKY domain
SuperFamily	SSF118290	5.23E-25	107	173	IPR003657	WRKY domain
PROSITE profile	PS50811	27.336	109	174	IPR003657	WRKY domain
SMART	SM00774	1.5E-30	114	173	IPR003657	WRKY domain
Pfam	PF03106	1.4E-21	115	172	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 175 aa Download sequence Send to blast
MCTMILSFRI NGAKMTDKNP RPADSADNYV TNQWPLELSE HLNFDDDQWL DDDPDSFVSG 60 HAFSHNNQAN EVGGFGGSGT HFEESSSRDV GNEREKKEVR DRVAFKTKSE VEILDDGSKW 120 RKYGKKMVKN SPNPRNYYRC SVDGWQVKKR VERDKDDPRF VITTYEGIHT HPSYS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	8e-23	104	171	7	74	Probable WRKY transcription factor 4
2lex_A	8e-23	104	171	7	74	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN32188.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003527752.2	1e-130	probable WRKY transcription factor 50
Swissprot	Q8VWQ5	1e-44	WRK50_ARATH; Probable WRKY transcription factor 50
TrEMBL	A0A0B2RJR5	1e-129	A0A0B2RJR5_GLYSO; Putative WRKY transcription factor 50
STRING	GLYMA06G05721.1	1e-129	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1120	34	110

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26170.1	2e-42	WRKY DNA-binding protein 50

Publications ? help Back to Top
Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro. Plant Methods, 2010. 6: p. 25 [PMID:21108821] Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933]