PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN31893.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bHLH | ||||||||
Protein Properties | Length: 218aa MW: 24730.8 Da PI: 8.6255 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.1 | 2.4e-11 | 43 | 89 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h + Er+RR+ + ++f L ++P + kK +Ka++L +A++Y+k+L+ KHN31893.1 43 DHIMSERKRRQLMAERFIALSAIIPGL-----KKIDKASVLSEAINYVKQLK 89 5999***********************.....9*****************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.875 | 39 | 88 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.5E-15 | 43 | 102 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.7E-9 | 43 | 88 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.09E-15 | 43 | 106 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.58E-10 | 44 | 89 | No hit | No description |
SMART | SM00353 | 7.2E-11 | 45 | 94 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MGGDISFFSE EHPNPTLYCV ANETHVQTGA KRGRSSWETP TRDHIMSERK RRQLMAERFI 60 ALSAIIPGLK KIDKASVLSE AINYVKQLKG RIAVLEQESS NKKSMMIFTK KCLQSHPHCE 120 KNSNHVLPQL QVEAIGLELE REVLIRILCE KPKGIFLKLL TLLENMHLSI VSSNVLPLGK 180 NTLNITIIAQ MGEEYNMTGD ELMSKLTQDL FKLYEVPQ |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 47 | 52 | ERKRRQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN31893.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003542127.1 | 1e-161 | transcription factor bHLH19 | ||||
TrEMBL | A0A0B2RIV9 | 1e-160 | A0A0B2RIV9_GLYSO; Transcription factor bHLH19 | ||||
TrEMBL | K7M401 | 1e-160 | K7M401_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA13G44582.1 | 1e-161 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14964 | 8 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22760.1 | 6e-29 | bHLH family protein |
Publications ? help Back to Top | |||
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