PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN31867.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family FAR1
Protein Properties Length: 273aa    MW: 31709.9 Da    PI: 8.2427
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN31867.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1354.8e-1148109269
        FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvk 69 
                 fYn YA+e GF vr +++ ++ +++e +++++ Cs  g++++++ +     r+r+etrtg  a++k +
  KHN31867.1  48 FYNWYANEQGFGVRFTNTWYR-KTKERYRAKLSCSSAGFKKRTEAN-----RPRPETRTGFPAMIKFR 109
                 9***************99997.67779*************998877.....9************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.8E-848109IPR004330FAR1 DNA binding domain
PROSITE profilePS509668.568185221IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
METAWYERKG ASLLPALEGA IEEKNNEAVP VVPAVGMEFD SYEDVYYFYN WYANEQGFGV  60
RFTNTWYRKT KERYRAKLSC SSAGFKKRTE ANRPRPETRT GFPAMIKFRM FRTLIVDAQD  120
EGKSQNALYS NQWKLNKDLD SKSSSFVPKS RSYFELQINA DGPVVTYIVQ EQVEVEGNQR  180
DARDYKVCYN EAEMEVLCIC GLFNFRGCLC RHALFILSQN EIKEIPAQYI LLRWRKGQAV  240
KVVEEGKKSH DHYRTAVHDV IGEYIEQASS CKR
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269|PubMed:15591448}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN31867.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150407e-93AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ9SSQ43e-23FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBLA0A0B2RJ690.0A0A0B2RJ69_GLYSO; Protein FAR1-RELATED SEQUENCE 6
STRINGGLYMA15G00440.31e-59(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.12e-25FAR1-related sequence 6
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  2. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]