PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN31450.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family Trihelix
Protein Properties Length: 623aa    MW: 70649.3 Da    PI: 6.8161
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN31450.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix48.81.8e-15114177270
    trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70 
                 Wt++evlaL ++r++me+++ +       W++vs+k++e gf++s+++Ckek+e+ ++++ +i+++ +k
  KHN31450.1 114 WTNDEVLALFRIRSSMENWFPEL-----TWDHVSRKLAEVGFKKSAEKCKEKFEDESRYFDNINNNYGK 177
                 ********************987.....9********************************99987666 PP
2trihelix92.44.7e-29473566185
    trihelix   1 rWtkqevlaLiearr.........emeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                 rW+++evlaLi++r          + +++ ++g+ k+plWe++s+ m+e g++rs+k+Ckekwen+nk+++k+k++ +k++s +s+tcpyf+ql
  KHN31450.1 473 RWPRDEVLALINLRCtslsssnnnNNNNEEKEGNNKGPLWERISQGMSELGYKRSAKRCKEKWENINKYFRKTKDNVNKKRSLNSRTCPYFHQL 566
                 8*************95555554444444444567***********************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.028106165IPR017877Myb-like domain
PfamPF138374.2E-10112177No hitNo description
CDDcd122033.38E-22472546No hitNo description
PfamPF138371.8E-19472566No hitNo description
PROSITE profilePS500906.017473539IPR017877Myb-like domain
Sequence ? help Back to Top
Protein Sequence    Length: 623 aa     Download sequence    Send to blast
MFDGAPDQFH QFIAPTRTTL PLHMSFPLHH HASSTPPPNT FLPFDPYNPS SHHHHLPSLQ  60
TNHLLHPLHP PTTIISPTPT HKHEQDKVAP INNNNDVEIQ RDQRQLPDQL TDSWTNDEVL  120
ALFRIRSSME NWFPELTWDH VSRKLAEVGF KKSAEKCKEK FEDESRYFDN INNNYGKNNF  180
RFLISELEEL CQNPDPGGGG DNHNGVEKTH HLGGDNMGHH ALEENKRDIE ITTATKQCDD  240
IVVEKSNISK VRKRKRRDRF EMFKGFCESV VNKMMAQQEE IHNRLLEDML KRDQEKFARE  300
EAWKKQELDR MNKELEIMAQ EQAIAGGRHA TIIEFLKKCA TTTTSLSSPP SQNAKYYKTN  360
GSNLPNCALH PQNPNDPSNE DNNLEPTPSP KMIQNHDQAT LLGAENPSAS DTLLQVPSSS  420
NSSPTPGHNP SSSLNSHNNI IPLDSNSVST YKPTSTTPMA STSENSKDDI GRRWPRDEVL  480
ALINLRCTSL SSSNNNNNNN EEKEGNNKGP LWERISQGMS ELGYKRSAKR CKEKWENINK  540
YFRKTKDNVN KKRSLNSRTC PYFHQLSCLY GQGKIVPQSD EREGKNYLNP TANSGDQVPP  600
DHDQVQADES SQVGSAALVQ YAC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1251256RKRKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN31450.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028226680.10.0trihelix transcription factor GTL1-like
RefseqXP_028226681.10.0trihelix transcription factor GTL1-like
TrEMBLA0A0B2RDK40.0A0A0B2RDK4_GLYSO; Trihelix transcription factor GTL2
STRINGGLYMA03G40611.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50433355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28300.11e-66Trihelix family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]