PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN31358.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family FAR1
Protein Properties Length: 533aa    MW: 62663.4 Da    PI: 6.5152
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN31358.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR170.54e-22131222290
        FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.....dgkwevtkleleHnHela 90 
                 fY++YA++ GFsvrk +  k+  ng + +r+f C +eg+++ +  +  ke+r+r++tr++Cka l+++++k      ++w+vtk++ eHnH l 
  KHN31358.1 131 FYKRYAYQHGFSVRKGRFIKR--NGIMRRRDFFCHREGRSSLKIIEPLKEQRNRESTRCECKAYLRISLQKshdifPSEWRVTKFVVEHNHVLL 222
                 9***************87776..9*9******************999*********************99865555579************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.3E-19131222IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 533 aa     Download sequence    Send to blast
MINNTMGEGN TSTRDMSTIN NTMGEGSTST RDMSTDKINV DLNEYPIEDI SLENGYSGTV  60
SEHFDHDIVA NDVLEVEEIE TYEKENIVSS SQNIEINEFA EEVDRDETYN ETNIVPFVGQ  120
IFLSEEEAFA FYKRYAYQHG FSVRKGRFIK RNGIMRRRDF FCHREGRSSL KIIEPLKEQR  180
NRESTRCECK AYLRISLQKS HDIFPSEWRV TKFVVEHNHV LLTQSEVRFL PANRTISEDD  240
IERIFLLKEG GLSVRQLMRV IELEKNVKHG YLPFIERDIR NLFVKTKKKV ERNDAKDLLK  300
YCEDAKKSCS KFQYAYTLDE ERRNYWALAY LRDHFFGGMT TTGRSESINA FIKRFINSHT  360
SLSDFTKQVD VAIDDIKQKE DHDIMLEKCK RINLKLMSPL QEQAHGVLTR FAFQKFQEEF  420
ERSTQYSIHH ENGNEFVLRY YKDANSRKHM VFWDDCHEIP SNYLPSRWRL QTSHDDDEVD  480
PQQVNVVFEE QVDVVHCPPP SKTKGRPKRR RLKGGKELSH NMNTCGLCKD HVE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1507511KRRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN31358.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF5336950.0EF533695.1 Glycine max clone BAC GM_WBb098N15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014622071.10.0protein FAR1-RELATED SEQUENCE 11-like isoform X4
TrEMBLA0A445L2F40.0A0A445L2F4_GLYSO; Protein FAR1-RELATED SEQUENCE 11
STRINGAES623831e-127(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1516549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.17e-55FAR1-related sequence 11
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]