PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN30812.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 414aa    MW: 45991.8 Da    PI: 4.4469
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN30812.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.23.8e-082262046
                     TTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding 20 GggtWktIartmgkgRtlkqcksrwqk 46
                     G++ W++ a++++ gRt++++k++w++
       KHN30812.1  2 GNK-WARMAAELP-GRTDNEIKNYWNT 26
                     899.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-12129IPR009057Homeodomain-like
PROSITE profilePS5129415.039132IPR017930Myb domain
PfamPF002493.1E-6226IPR001005SANT/Myb domain
SuperFamilySSF466897.26E-6237IPR009057Homeodomain-like
CDDcd001671.58E-5326No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    Send to blast
MGNKWARMAA ELPGRTDNEI KNYWNTRIKR MQRAGLPIYP EELCQRILNG NQESQNVGTM  60
TNEACHHDDL SQTNNFDIPD VEFKNFKFRH GLPHVPSIFD MPESSLFDQS SDSSHSYNFL  120
FPTMRPTKRP RESEMLYDSF GSCSINAAPL FDQYGNYTFE KISDHPGLSL PCDPVLNTTD  180
QFHGDNLTGS HAALNGNASA SVPIFGAMKL ELPSLQYPET QHGSWGTPMS PLPSLESVDT  240
LIQSPTLEPI LSDPISPQSS GLLEAIVYNS KSLKGSNNDL LLQETIATAN EVANISTLNH  300
SFQTEWDELG DPNSPLGQSA ASVLTDYTPV RMCSVDGYQS TETSQDHDDK HEAPTTQFPD  360
SSSKKKILKQ VDYTQPDALL DLGWFGNNTK YESDQFVQQD ALGALFGDNC QHQP
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN30812.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028195960.10.0transcription factor GAMYB-like isoform X1
TrEMBLA0A0B2RG860.0A0A0B2RG86_GLYSO; Transcription factor GAMYB
TrEMBLA0A445HCE90.0A0A445HCE9_GLYSO; Transcription factor GAMYB isoform A
STRINGGLYMA13G04031.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20473485
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06100.37e-48myb domain protein 33
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]