PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN30598.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family B3
Protein Properties Length: 723aa    MW: 80465.5 Da    PI: 7.4793
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN30598.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.17.7e-19317417199
                 EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                 f+kvl+ sd+++ grlvlpk++ae++   +++ e+  l+++d +g+ W++++++  +++s++yvl+ G     +a +L++gD+v+F++++  ++++v++
  KHN30598.1 317 FEKVLSASDAGRIGRLVLPKSCAEAYfpPISQSEGLPLQFKDVKGNDWTFQFRFwpNNNSRMYVLE-GVTPCIQAMQLNAGDIVTFSRID-PGGKFVMG 413
                 99**************************555556677***************9989999999***9.********************987.67767888 PP

                 EE-S CS
          B3  96 vfrk 99 
                  +r+
  KHN30598.1 414 YRRA 417
                 7775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.5E-29314421IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.85E-20314416IPR015300DNA-binding pseudobarrel domain
CDDcd100173.57E-23315416No hitNo description
SMARTSM010191.3E-20317417IPR003340B3 DNA binding domain
PfamPF023621.8E-16317417IPR003340B3 DNA binding domain
PROSITE profilePS5086310.701317418IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 723 aa     Download sequence    Send to blast
MEVEVCMNVS CKNGYAREWK KGWPLRSGGF ARLCHKCGSA YENLIFCQKF HLYQTGWREC  60
SFCNKTVHCG CIVSSSMFEY LDYGGIGCAT CVKTSQLNLI RDTKNTIGSV RSIKNNARNR  120
HTEHIDGRLL VDSAGKGNLM LLRRDVEASE SIRWPRAERD GIDSCIGPNR QEDRRFSNVV  180
KLSGHSLNFT TLDHNRPTWE TQTMHKSSSL NMSLGTSSGN SVQPSALDIA ERRLEDKASF  240
CPFPQGQRSL SISKSLMDGI TMNLEDSKDV ISQERVARLP ANGKPKNLLH FRYWPRITGQ  300
ELEKLSGDLK STIVPLFEKV LSASDAGRIG RLVLPKSCAE AYFPPISQSE GLPLQFKDVK  360
GNDWTFQFRF WPNNNSRMYV LEGVTPCIQA MQLNAGDIVT FSRIDPGGKF VMGYRRASDS  420
MDTQDASTFA HSNGFATKEA TFSGATANLH SGKSYPDLLQ TRNGNGEPYL NGCSEHLRFG  480
TGTADCLQTE NCEMVNNDLL QQTISVSEKT LNIAPKSKRL LTHNEDAVEL RITWEEAQDL  540
LHPPPSTMPS VETIEDKEFE EFEEPPVFGK GTTINDPPSG SLSSASEKMS SMDLENIPVT  600
SKDSKKRRIM EKLDSSAGAT TKHPRHCSGC TCILCIQPPS GKGRHKPTCT TVRRQFKTLM  660
KRKKQRESDA TQNDQIHHSD EGDTHGASRE GAIASNLENE GSLNRMDELG TGQIDLNSHP  720
DHE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A2e-652954242131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN30598.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1419237e-43AC141923.27 Medicago truncatula clone mth2-7f19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028200028.10.0B3 domain-containing transcription repressor VAL1-like
RefseqXP_028200029.10.0B3 domain-containing transcription repressor VAL1-like
TrEMBLA0A0B2RFD00.0A0A0B2RFD0_GLYSO; B3 domain-containing transcription repressor VAL1
STRINGGLYMA14G38492.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15634911
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30470.11e-154high-level expression of sugar-inducible gene 2
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]