PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN30455.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

HD-ZIP

Protein Properties

Length: 688aa MW: 75612.7 Da PI: 6.5125

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN30455.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62.5	6.2e-20	48	103	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++ +++t+ q+ee+e++F+++++p+ ++r+eL+++lgL+ qVk+WFqN+R+++k KHN30455.1 48 KKGYRRHTQRQIEEMEAFFKQCPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 103 577889***********************************************999 PP
2	START	206.9	7.9e-65	235	455	1	206
HHHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEEC CS START 1 elaeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevis 86 ela +a++el ++a+a+ep+Wv s e++n+de+l++f++ + ++ea+r+s+vv+m++ +l +l+d++ qW++ + +a tlev+s KHN30455.1 235 ELAVAAMEELTRLAQAGEPLWVPSNhhsEILNEDEYLRTFPTRGLgpkplgLRSEASRESVVVIMNHINLIDILMDVN-QWSTVFCgivsRALTLEVLS 332 57899*********************************88766*****************************.**99999***** PP TT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXH CS START 87 sg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlph 178 +g galq+m++e+q+ splvp R+ +fvRy++q+++g w++vdvS+d+ ++ + + R++++pSg+li++++ng+skvtw+ehv++++r +h KHN30455.1 333 TGiagnynGALQVMSSEFQVASPLVPtRENYFVRYCKQQPDGIWAVVDVSLDNLRPST----ISRSRRRPSGCLIQELPNGYSKVTWIEHVEVDDRAVH 427 ****************************************************88....79******************************* PP HHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 179 wllrslvksglaegaktwvatlqrqcek 206 +++r lv+sgla+gak+wvatl+rqce+ KHN30455.1 428 SIYRTLVNSGLAFGAKRWVATLERQCER 455 ************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.43E-19	32	105	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.4E-21	33	103	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.682	45	105	IPR001356	Homeobox domain
SMART	SM00389	1.8E-18	47	109	IPR001356	Homeobox domain
Pfam	PF00046	1.9E-17	48	103	IPR001356	Homeobox domain
CDD	cd00086	2.47E-18	48	106	No hit	No description
PROSITE pattern	PS00027	0	80	103	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	46.166	226	458	IPR002913	START domain
SuperFamily	SSF55961	3.3E-36	227	457	No hit	No description
CDD	cd08875	7.83E-123	230	454	No hit	No description
SMART	SM00234	3.3E-66	235	455	IPR002913	START domain
Pfam	PF01852	2.3E-54	236	455	IPR002913	START domain
Gene3D	G3DSA:3.30.530.20	1.2E-6	337	455	IPR023393	START-like domain
SuperFamily	SSF55961	2.2E-16	476	678	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 688 aa Download sequence Send to blast
MSPPHKTTCS ESDLAKPCRD DEYETKSITD TMDAPSGDDQ DPNPRPKKKG YRRHTQRQIE 60 EMEAFFKQCP HPDDKQRKEL SRELGLEPLQ VKFWFQNKRT QMKTQHERNE NAILKAENEK 120 LRAENSRYKE ALTNATCPNC GGPAALGEMS FDEQHLRIEN ARLREEIDRI SGIAAKYVGK 180 PVTSSYSNLS SLNNNHVPVG NYGSQSGTVG EMYGGSDLFR PLPAPADADK PMIVELAVAA 240 MEELTRLAQA GEPLWVPSNH HSEILNEDEY LRTFPTRGLG PKPLGLRSEA SRESVVVIMN 300 HINLIDILMD VNQWSTVFCG IVSRALTLEV LSTGIAGNYN GALQVMSSEF QVASPLVPTR 360 ENYFVRYCKQ QPDGIWAVVD VSLDNLRPST ISRSRRRPSG CLIQELPNGY SKVTWIEHVE 420 VDDRAVHSIY RTLVNSGLAF GAKRWVATLE RQCERLASSM ANNIPAGDLC VITSAEGRKS 480 MMKLAERMVM SYCTGVGAST AHAWTTLSAT GCDDVRVMTR KSTDEPGRPP GIVLSAATSF 540 WLPVPPKRVF HFLRDQNSRN EVSIYLANSS QSNMLILQES CTDSTGSYVV YAPVDIVAMN 600 VVLSGGDPDY VALLPSGFAI LPDGPPALNG GPIHDVGSGG SLLTVAFQIL VDSAPTAKLS 660 LGSVATVNSL IKCTVERIKV AVIRDNTT

Sequence ? help Back to Top

Protein Sequence Length: 688 aa Download sequence Send to blast

MSPPHKTTCS ESDLAKPCRD DEYETKSITD TMDAPSGDDQ DPNPRPKKKG YRRHTQRQIE  60
EMEAFFKQCP HPDDKQRKEL SRELGLEPLQ VKFWFQNKRT QMKTQHERNE NAILKAENEK  120
LRAENSRYKE ALTNATCPNC GGPAALGEMS FDEQHLRIEN ARLREEIDRI SGIAAKYVGK  180
PVTSSYSNLS SLNNNHVPVG NYGSQSGTVG EMYGGSDLFR PLPAPADADK PMIVELAVAA  240
MEELTRLAQA GEPLWVPSNH HSEILNEDEY LRTFPTRGLG PKPLGLRSEA SRESVVVIMN  300
HINLIDILMD VNQWSTVFCG IVSRALTLEV LSTGIAGNYN GALQVMSSEF QVASPLVPTR  360
ENYFVRYCKQ QPDGIWAVVD VSLDNLRPST ISRSRRRPSG CLIQELPNGY SKVTWIEHVE  420
VDDRAVHSIY RTLVNSGLAF GAKRWVATLE RQCERLASSM ANNIPAGDLC VITSAEGRKS  480
MMKLAERMVM SYCTGVGAST AHAWTTLSAT GCDDVRVMTR KSTDEPGRPP GIVLSAATSF  540
WLPVPPKRVF HFLRDQNSRN EVSIYLANSS QSNMLILQES CTDSTGSYVV YAPVDIVAMN  600
VVLSGGDPDY VALLPSGFAI LPDGPPALNG GPIHDVGSGG SLLTVAFQIL VDSAPTAKLS  660
LGSVATVNSL IKCTVERIKV AVIRDNTT

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to ATML1. {ECO:0000269\|PubMed:12505995}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN30455.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015043	1e-143	AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003517589.1	0.0	homeobox-leucine zipper protein MERISTEM L1 isoform X1
Refseq	XP_014632955.1	0.0	homeobox-leucine zipper protein MERISTEM L1 isoform X1
Refseq	XP_028181022.1	0.0	homeobox-leucine zipper protein MERISTEM L1-like isoform X1
Swissprot	Q93V99	0.0	PDF2_ARATH; Homeobox-leucine zipper protein PROTODERMAL FACTOR 2
TrEMBL	A0A0B2RA76	0.0	A0A0B2RA76_GLYSO; Homeobox-leucine zipper protein PROTODERMAL FACTOR 2
STRING	GLYMA01G45070.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1508	34	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21750.2	0.0	HD-ZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933]