PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN30403.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

G2-like

Protein Properties

Length: 355aa MW: 39586 Da PI: 9.0329

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN30403.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	107	1e-33	35	89	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt eLHerFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQk+Rl KHN30403.1 35 KPRLRWTVELHERFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRL 89 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.7E-32	32	90	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.801	32	92	IPR017930	Myb domain
SuperFamily	SSF46689	1.76E-16	34	90	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.3E-23	35	90	IPR006447	Myb domain, plants
Pfam	PF00249	2.6E-8	37	87	IPR001005	SANT/Myb domain
Pfam	PF14379	1.7E-21	131	169	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence Send to blast
MERMFPPKKP STMNSHDRSM CVQGDSGLVL TTDPKPRLRW TVELHERFVD AVAQLGGPDK 60 ATPKTIMRVM GVKGLTLYHL KSHLQKFRLG KQPHKDFNDH SIKDGMRASA LELQRNIGSS 120 SAMIGRNMNE MQMEVQRRLH EQLEVQKNLQ LRIEAQGKYM QSILEKAYHT LAGENMATNM 180 KGMGAPLGTT EMGVMKEFGS LNYPSFQDLN IYASGDQQLD GFMPSNNNNE TLFVGKKRPN 240 CPYSGSGKSP LIWSDDLRLQ DLGTASSCIS PQDDPFKGDH KVQISPPSMD SDPISEIYDT 300 KPMILHGESV SDQNKFDASM KVERPSPKRS PLQPDRTSPM INSSSVAQGR SSPFG

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence Send to blast

MERMFPPKKP STMNSHDRSM CVQGDSGLVL TTDPKPRLRW TVELHERFVD AVAQLGGPDK  60
ATPKTIMRVM GVKGLTLYHL KSHLQKFRLG KQPHKDFNDH SIKDGMRASA LELQRNIGSS  120
SAMIGRNMNE MQMEVQRRLH EQLEVQKNLQ LRIEAQGKYM QSILEKAYHT LAGENMATNM  180
KGMGAPLGTT EMGVMKEFGS LNYPSFQDLN IYASGDQQLD GFMPSNNNNE TLFVGKKRPN  240
CPYSGSGKSP LIWSDDLRLQ DLGTASSCIS PQDDPFKGDH KVQISPPSMD SDPISEIYDT  300
KPMILHGESV SDQNKFDASM KVERPSPKRS PLQPDRTSPM INSSSVAQGR SSPFG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	4e-19	35	91	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	4e-19	35	91	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	4e-19	35	91	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	4e-19	35	91	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor required for phloem identity. Has a dual role both in promoting phloem differentiation and in repressing xylem differentiation during vascular development. Regulates the expression of the transcription factor NAC045 (AC A4VCM0). May activate the transcription of specific genes involved in phosphate uptake or assimilation (PubMed:15592750). Promotes flowering through transcriptional activation of both FT and its transport machinery component, FTIP1 (PubMed:26239308). {ECO:0000269\|PubMed:14614507, ECO:0000269\|PubMed:18523061, ECO:0000269\|PubMed:25081480, ECO:0000269\|PubMed:26239308, ECO:0000305\|PubMed:15592750}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN30403.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by phosphate deficiency. {ECO:0000269\|PubMed:15592750}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ343457	1e-176	HQ343457.1 Lotus japonicus cultivar MG-20 IPN2 (IPN2) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001350656.1	0.0	MYB-CC domain-containing transcription factor PHR26
Refseq	XP_028202842.1	0.0	myb family transcription factor APL-like
Swissprot	Q9SAK5	1e-125	APL_ARATH; Myb family transcription factor APL
TrEMBL	A0A0B2REW4	0.0	A0A0B2REW4_GLYSO; Myb family transcription factor APL
TrEMBL	I1MI86	0.0	I1MI86_SOYBN; Uncharacterized protein
STRING	GLYMA15G29620.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4964	32	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79430.2	1e-122	G2-like family protein

Publications ? help Back to Top
Martínez-Navarro AC,Galván-Gordillo SV,Xoconostle-Cázares B,Ruiz-Medrano R Vascular gene expression: a hypothesis. Front Plant Sci, 2013. 4: p. 261 [PMID:23882276] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Kondo Y, et al. Vascular Cell Induction Culture System Using Arabidopsis Leaves (VISUAL) Reveals the Sequential Differentiation of Sieve Element-Like Cells. Plant Cell, 2016. 28(6): p. 1250-62 [PMID:27194709] Shibuta M,Abe M FE Controls the Transcription of Downstream Flowering Regulators Through Two Distinct Mechanisms in Leaf Phloem Companion Cells. Plant Cell Physiol., 2017. 58(11): p. 2017-2025 [PMID:29036620]