PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN29773.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family SBP
Protein Properties Length: 1033aa    MW: 114149 Da    PI: 7.0001
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN29773.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP130.65.6e-41147223177
                 --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
         SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                 +Cqve+C+adls+ak+yhrrhkvC++hska+++lv +++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+ 
  KHN29773.1 147 VCQVEDCRADLSNAKDYHRRHKVCDMHSKATQALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTL 223
                 6*************************************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.4E-32142209IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.077145222IPR004333Transcription factor, SBP-box
SuperFamilySSF1036127.46E-38146227IPR004333Transcription factor, SBP-box
PfamPF031104.2E-29148221IPR004333Transcription factor, SBP-box
SuperFamilySSF484032.49E-7804920IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.205.5E-6805916IPR020683Ankyrin repeat-containing domain
CDDcd002047.02E-8805915No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1033 aa     Download sequence    Send to blast
MESQLEGKNQ YLYGPVVPEM KSVGKRSLEW DLNDWKWDGD LFTARQLNSV PSDCRSRELF  60
PTDPEILATG GASNSLSSAY DDANLGEGKR ELEKRRRGVN DDGGVEMNDG AGSLNLNLGG  120
QVYPIMEGEE KSGKKTKMTA STSSRAVCQV EDCRADLSNA KDYHRRHKVC DMHSKATQAL  180
VGNVMQRFCQ QCSRFHVLQE FDEGKRSCRR RLAGHNKRRR KTLPDATVVN GGSLNEEKGS  240
SYLLMSLLRI LSNMHSNGSD NMRNQDVLSH LLRNLASLAG TINGRNIVSL LEGSQGLVKA  300
GTSGAAQNVP NTNSDGPEPS RPFDSSIKMD DGLIHRDPPE SMVQRETTPA NDMAKKCIAS  360
GSDGVGSLKS PSVPQSSNVL LSRDGLPPQS VAAQTTVGRI GLSNIDLNNV YDDVQDYVEN  420
TRNSCPPLPS GNGSLDHPLW IQCDSLKSSP PQTSRNSDST STQSPSSSSG EAQSRTDRIV  480
FKLFGKAPND FPHALRSQIL NWLSHSPTEI ESYIRPGCII LTIYLRLENS AWEELCYNLE  540
SSLRKLAAPN DSFWRTGWIY TRVQHSVAFL YNGQVVLDAP LRLKSPQNCQ ILCVKPLAVS  600
ASSSAQFVVK GFNFLLSNTR LLCALEGKYL VQDSCYDLID SADAVNGHQE LQHLSFSCHV  660
PNVTGRGFIE VVEDNGLSSC SFPFIVAEQE ICLEICTLDN VIEAAEMADD NQIKTNLMEE  720
KTQALYFIQE MGWLLHRSRV KVRLGPMAPV QDRFHFNRFI WLVGFSMDHD WCAVMKKLLN  780
IIFEGTVDTG DHASVELALL EMGLLHKAVK RNCRPMVEIL LKFVPVKASD GGDSNEKQVN  840
KSPDRFIFRP DTVGPVGLTP LHVAASMHGS ENVLDALTDD PGMVGTEAWK SAQDATGLTP  900
YDYASMRGYY SYIQLVQSKT SNTCKSQHVL DIPGTLVDSN TKQKQSDRHR SSKVSSLQTE  960
KIETTAMPRR CGLCQQKLAY GGMRRALVYR PAMLSMVAIA AVCVCVALLF KSSPKVYYVF  1020
QPFSWESLEY GSI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A5e-30139221284squamosa promoter binding protein-like 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN29773.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028180789.10.0squamosa promoter-binding-like protein 1
TrEMBLA0A0B2RD060.0A0A0B2RD06_GLYSO; Squamosa promoter-binding-like protein 1
STRINGGLYMA09G09790.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15393495
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47070.10.0squamosa promoter binding protein-like 1
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]