PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN29767.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MIKC_MADS
Protein Properties Length: 248aa    MW: 28635.6 Da    PI: 8.8205
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN29767.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF97.74.9e-31959151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                krienk+nrqvtf+kRr g+lKKA+ELSvLCdaeva+iifs++gklye++s
  KHN29767.1  9 KRIENKINRQVTFAKRRDGLLKKAYELSVLCDAEVALIIFSTRGKLYEFCS 59
                79***********************************************96 PP
2K-box100.32.7e-338417311100
       K-box  11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                  ++ es+++e+ kLk++ e+Lqr+qR+llGedL++L+ k+L+qLe+qL++slk++Rs+K++++l+q+ +lq+ke++l e+n++L++klee
  KHN29767.1  84 GKELESSYREYLKLKARFESLQRTQRNLLGEDLGPLNTKDLEQLERQLDSSLKQVRSTKTQFMLDQLADLQNKEHMLVEANRSLTMKLEE 173
                 577899*********************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.9E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.123161IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.32E-33277IPR002100Transcription factor, MADS-box
CDDcd002651.58E-43276No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004044.3E-32323IPR002100Transcription factor, MADS-box
PfamPF003191.1E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004044.3E-322338IPR002100Transcription factor, MADS-box
PRINTSPR004044.3E-323859IPR002100Transcription factor, MADS-box
PfamPF014861.4E-2786171IPR002487Transcription factor, K-box
PROSITE profilePS5129715.38287177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009611Biological Processresponse to wounding
GO:0048481Biological Processplant ovule development
GO:0071486Biological Processcellular response to high light intensity
GO:0071492Biological Processcellular response to UV-A
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FAKRRDGLLK KAYELSVLCD AEVALIIFST RGKLYEFCST  60
NSMLKTLERY QKCSYGAVEV SKPGKELESS YREYLKLKAR FESLQRTQRN LLGEDLGPLN  120
TKDLEQLERQ LDSSLKQVRS TKTQFMLDQL ADLQNKEHML VEANRSLTMK LEEINSRNQY  180
RQTWEAGEQS MPYGTQNAHS QGFFQPLECN PTLQIGSDYR YIPEASEQQL AATTQAQQVN  240
GFIPGWML
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A2e-36751711101Developmental protein SEPALLATA 3
4ox0_B2e-36751711101Developmental protein SEPALLATA 3
4ox0_C2e-36751711101Developmental protein SEPALLATA 3
4ox0_D2e-36751711101Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN29767.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ1599050.0DQ159905.1 Glycine max MADS-box protein (SEP1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001238296.20.0transcription factor SEP1 isoform 2
RefseqXP_028216322.10.0developmental protein SEPALLATA 1-like isoform X2
SwissprotQ8LLR21e-147MADS2_VITVI; Agamous-like MADS-box protein MADS2
TrEMBLA0A0B2RD360.0A0A0B2RD36_GLYSO; Developmental protein SEPALLATA 2
STRINGGLYMA19G04320.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22932178
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02310.11e-124MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  4. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]