PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN29766.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

M-type_MADS

Protein Properties

Length: 65aa MW: 7444.74 Da PI: 11.3844

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN29766.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	86.2	1.9e-27	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ienk+ rqvtfskRr+g+ KKA+E+SvLCda+va+i+f +gkl+eyss KHN29766.1 9 KQIENKISRQVTFSKRRTGLRKKANEISVLCDAQVALIVFNAKGKLFEYSS 59 78***********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	3.8E-34	1	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	30.025	1	61	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	7.98E-28	2	61	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.7E-29	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.2E-24	11	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.7E-29	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.7E-29	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 65 aa Download sequence Send to blast
MGRGRVQLKQ IENKISRQVT FSKRRTGLRK KANEISVLCD AQVALIVFNA KGKLFEYSSE 60 SRFVI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6byy_A	4e-19	1	59	1	59	MEF2 CHIMERA
6byy_B	4e-19	1	59	1	59	MEF2 CHIMERA
6byy_C	4e-19	1	59	1	59	MEF2 CHIMERA
6byy_D	4e-19	1	59	1	59	MEF2 CHIMERA
6bz1_A	4e-19	1	59	1	59	MEF2 CHIMERA
6bz1_B	4e-19	1	59	1	59	MEF2 CHIMERA
6bz1_C	4e-19	1	59	1	59	MEF2 CHIMERA
6bz1_D	4e-19	1	59	1	59	MEF2 CHIMERA
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in flower development. {ECO:0000250\|UniProtKB:Q0HA25}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN29766.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015044	5e-66	AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007151390.1	9e-40	hypothetical protein PHAVU_004G042400g
Swissprot	D7SMN6	9e-31	FULL_VITVI; Agamous-like MADS-box protein FUL-L
TrEMBL	A0A0B2R614	2e-38	A0A0B2R614_GLYSO; Agamous-like MADS-box protein AGL8
TrEMBL	V7BZR4	2e-38	V7BZR4_PHAVU; Uncharacterized protein
STRING	XP_007151390.1	3e-39	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF119	33	360

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60910.1	4e-32	AGAMOUS-like 8

Publications ? help Back to Top
Jaillon O, et al. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature, 2007. 449(7161): p. 463-7 [PMID:17721507] Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ Genome-wide analysis of MIKCC-type MADS box genes in grapevine. Plant Physiol., 2009. 149(1): p. 354-69 [PMID:18997115] Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933] Grimplet J,Martínez-Zapater JM,Carmona MJ Structural and functional annotation of the MADS-box transcription factor family in grapevine. BMC Genomics, 2016. 17: p. 80 [PMID:26818751]