PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN29741.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HD-ZIP
Protein Properties Length: 266aa    MW: 30802.7 Da    PI: 9.4436
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN29741.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.31.5e-19111165256
                 T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 +k+ ++tkeq  +Le+ F+++ ++s ++++eLAkkl+L +rqV vWFqNrRa+ k
  KHN29741.1 111 KKKLRLTKEQSAVLEDSFKEHYTISPKQKQELAKKLNLRTRQVEVWFQNRRARTK 165
                 78889************************************************98 PP
2HD-ZIP_I/II112.13.8e-36111199189
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                  +kk+rl+keq+++LE+sF+e+ +++p++K+ela++L+l++rqv+vWFqnrRARtk+kq+E++ e Lk+++++l+een++Leke +eL++
   KHN29741.1 111 KKKLRLTKEQSAVLEDSFKEHYTISPKQKQELAKKLNLRTRQVEVWFQNRRARTKLKQTEVERELLKKCCETLTEENKMLEKELQELKS 199
                  59*************************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.61E-18105168IPR009057Homeodomain-like
PROSITE profilePS5007117.572107167IPR001356Homeobox domain
SMARTSM003893.2E-17109171IPR001356Homeobox domain
CDDcd000867.86E-16110168No hitNo description
PfamPF000465.4E-17111165IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.8E-18111165IPR009057Homeodomain-like
PROSITE patternPS000270142165IPR017970Homeobox, conserved site
SMARTSM003403.5E-15167211IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MMKTNEQRQR QRQRQSQKKK EADPCNKAYP SLKLGPPDDE ANNNNQQITN IESDEYYYFH  60
PHASSRSPSA VSSFSNSSII IKREREQLEL EVEKISLSRD FVEVDENGNP KKKLRLTKEQ  120
SAVLEDSFKE HYTISPKQKQ ELAKKLNLRT RQVEVWFQNR RARTKLKQTE VERELLKKCC  180
ETLTEENKML EKELQELKST KTSMGPFYMQ LPVESLRICP SCERISGGNN GSSPTTALLE  240
APKAHKDQPF YKNNYTFTQS SAAFAS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1159167RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN29741.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028227770.10.0homeobox-leucine zipper protein HOX15-like
SwissprotA2XE766e-57HOX19_ORYSI; Homeobox-leucine zipper protein HOX19
SwissprotQ8GRL46e-57HOX19_ORYSJ; Homeobox-leucine zipper protein HOX19
TrEMBLA0A445KWQ20.0A0A445KWQ2_GLYSO; Homeobox-leucine zipper protein HOX19 (Fragment)
STRINGGLYMA04G05200.21e-158(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF114433107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.12e-57homeobox from Arabidopsis thaliana
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]