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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
KHN29588.1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
| Family |
MIKC_MADS |
| Protein Properties |
Length: 311aa MW: 36230.4 Da PI: 7.7941 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| KHN29588.1 | genome | TCUHK | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 84 | 9.2e-27 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krienk+ rqvtfskRr g+lKK +ELSvLCda++ +iifsstgk++e+++
KHN29588.1 9 KRIENKTTRQVTFSKRRCGLLKKTKELSVLCDAKIGIIIFSSTGKMREWCT 59
79***********************************************96 PP
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| 2 | K-box | 58 | 4e-20 | 90 | 169 | 16 | 95 |
K-box 16 slqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95
+ +++a L++++ L+ e+ ++lGed L++++L +Leq+Le+s+ ++R++ nell +q+e+l++ke+ l+een++L+
KHN29588.1 90 EFVHNMAMLRQKTIRLELEIQRYLGEDTRGLQYEDLTKLEQELENSVARVRNRHNELLQQQMENLRRKERILEEENNNLS 169
56678999**********************************************************************97 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0008360 | Biological Process | regulation of cell shape |
| GO:0048316 | Biological Process | seed development |
| GO:0048481 | Biological Process | plant ovule development |
| GO:0080155 | Biological Process | regulation of double fertilization forming a zygote and endosperm |
| GO:2000029 | Biological Process | regulation of proanthocyanidin biosynthetic process |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 311 aa
Download sequence Send
to blast |
MGRGKIEIKR IENKTTRQVT FSKRRCGLLK KTKELSVLCD AKIGIIIFSS TGKMREWCTE 60
PFRMEQIIEQ YQISKGTCIA ERGRDHPREE FVHNMAMLRQ KTIRLELEIQ RYLGEDTRGL 120
QYEDLTKLEQ ELENSVARVR NRHNELLQQQ MENLRRKERI LEEENNNLSN WEHQAVLEFQ 180
KAADTVEASK PMHVMDHFSF FEEQPAGSIL QLASPMLPHF YPYLQLAQPN IQDSVRDQSY 240
NNEWSPGTIC GGVTWRRPKI VEYSIRSGQY SKDVVMTKLE GISGAMEGFK ETLVRFGGNE 300
EGKIFCEGCM K
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| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor involved in the developmental regulation of the endothelium and in the accumulation of proanthocyanidins (PAs) or condensed tannins which give the seed its brown pigmentation after oxidation (PubMed:12368498, PubMed:16080001). Necessary for the normal activation of the BANYULS promoter in the endothelium body (PubMed:12368498). Is required, together with AGL11/STK for the maternal control of endothelium formation, which is essential for female gametophyte development and fertilization, and seed formation (PubMed:22176531). Interacts genetically with AGL1/SHP1 and AGL5/SHP2 in a partially antagonistic manner and represses AGL1/SHP1, AGL5/SHP2, and AGL8/FUL during flower development. Is essential for the coordination of cell divisions in ovule, seed coat development and endosperm formation (PubMed:27776173). Mediates the crosstalk between endothelium and nucellus to ensure proper seed formation. Functions redundantly with AGL63/GOA to repress nucellus growth and promote its degeneration. Represses the negative regulator of autophagy and programmed cell death HVA22D in the proximal nucellus (PubMed:27233529). Binds specifically to the CArG box DNA sequence 5'-CC (A/T)6 GG-3' (PubMed:16080001). {ECO:0000269|PubMed:12368498, ECO:0000269|PubMed:16080001, ECO:0000269|PubMed:22176531, ECO:0000269|PubMed:27233529, ECO:0000269|PubMed:27776173}. |
| Publications
? help Back to Top |
- Kim K,Jiang K,Teng SL,Feldman LJ,Huang H
Using biologically interrelated experiments to identify pathway genes in Arabidopsis.
Bioinformatics, 2012. 28(6): p. 815-22
[PMID:22271267] - Qi X, et al.
Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
Nat Commun, 2014. 5: p. 4340
[PMID:25004933] - Rhodes DH, et al.
Genome-wide association study of grain polyphenol concentrations in global sorghum [Sorghum bicolor (L.) Moench] germplasm.
J. Agric. Food Chem., 2014. 62(45): p. 10916-27
[PMID:25272193] - Xu W, et al.
Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds.
Plant Cell, 2016. 28(6): p. 1343-60
[PMID:27233529] - Ehlers K, et al.
The MADS Box Genes ABS, SHP1, and SHP2 Are Essential for the Coordination of Cell Divisions in Ovule and Seed Coat Development and for Endosperm Formation in Arabidopsis thaliana.
PLoS ONE, 2016. 11(10): p. e0165075
[PMID:27776173] - Coen O, et al.
Developmental patterning of the sub-epidermal integument cell layer in Arabidopsis seeds.
Development, 2017. 144(8): p. 1490-1497
[PMID:28348169] - Xu W, et al.
TRANSPARENT TESTA 16 and 15 act through different mechanisms to control proanthocyanidin accumulation in Arabidopsis testa.
J. Exp. Bot., 2017. 68(11): p. 2859-2870
[PMID:28830101] - Fiume E,Coen O,Xu W,Lepiniec L,Magnani E
Developmental patterning of sub-epidermal cells in the outer integument of Arabidopsis seeds.
PLoS ONE, 2017. 12(11): p. e0188148
[PMID:29141031]
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