PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN29318.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 273aa    MW: 31110.1 Da    PI: 10.1522
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN29318.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.51.3e-071847131
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartm 31
                     r +WT +E++++++a +++  + Wk+I + +
       KHN29318.1 18 RENWTDQEHDKFLEALHLFERD-WKKIEAFI 47
                     789*****************77.****8765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.51E-111260IPR009057Homeodomain-like
PROSITE profilePS512939.481663IPR017884SANT domain
TIGRFAMsTIGR015572.4E-81657IPR006447Myb domain, plants
PfamPF002498.7E-61847IPR001005SANT/Myb domain
CDDcd001670.003892055No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MEDQSKKVRK PYTITKSREN WTDQEHDKFL EALHLFERDW KKIEAFIRSH AQKYFMKIQK  60
NGTSEHVPPP RPKRKAAHPY PQKASKNSPT ISQVARPFQS SSALSESSNI YRPDSSSVLR  120
TPVSSVPLPS WGYNVAPPID DMVVVIQQAN PFSYCYSSSN ESTPRGWPSS KESDQGKSII  180
VMPDFAQVYR FIGSVFDPNA TNHLQTLKQM NPINVKTVLL SMRNLSTNLR SPEFENERRL  240
LSLYNANLEK GKSGSHHRNQ PLSDRSESAV LYA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN29318.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150372e-44AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003551672.11e-154protein REVEILLE 6
SwissprotQ8H0W37e-86RVE6_ARATH; Protein REVEILLE 6
TrEMBLK7LG151e-178K7LG15_SOYBN; Uncharacterized protein
STRINGGLYMA09G39111.11e-179(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11193396
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.27e-74MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]
  3. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]