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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN29055.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | CAMTA | ||||||||
Protein Properties | Length: 1102aa MW: 124635 Da PI: 5.9323 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 177.8 | 1.4e-55 | 21 | 136 | 3 | 118 |
CG-1 3 kekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywl 101 + ++rwl++ ei+aiL n++k++++ e+++ p+sgsl+L++rk++r+frkDG++w+kkkdgktvrE+he+LK g+v+vl+cyYah+een++fqrr+ywl KHN29055.1 21 EAQHRWLRPAEICAILGNYKKFRIAPEPAHMPPSGSLFLFDRKVLRHFRKDGHNWRKKKDGKTVREAHERLKAGSVDVLHCYYAHGEENENFQRRTYWL 119 669************************************************************************************************ PP CG-1 102 Leeelekivlvhylevk 118 Leeel++ivlvhy++vk KHN29055.1 120 LEEELSHIVLVHYRQVK 136 **************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 78.812 | 15 | 141 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 4.4E-73 | 18 | 136 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 1.2E-48 | 21 | 134 | IPR005559 | CG-1 DNA-binding domain |
SuperFamily | SSF52540 | 9.03E-8 | 414 | 443 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
SuperFamily | SSF81296 | 3.67E-16 | 520 | 605 | IPR014756 | Immunoglobulin E-set |
Pfam | PF01833 | 4.0E-5 | 520 | 596 | IPR002909 | IPT domain |
Gene3D | G3DSA:2.60.40.10 | 2.8E-4 | 521 | 594 | IPR013783 | Immunoglobulin-like fold |
SuperFamily | SSF48403 | 2.02E-18 | 699 | 815 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 1.4E-18 | 701 | 817 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 5.97E-15 | 701 | 813 | No hit | No description |
PROSITE profile | PS50297 | 19.518 | 704 | 825 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF12796 | 8.0E-8 | 726 | 821 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50088 | 9.351 | 754 | 786 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 0.022 | 754 | 783 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 110 | 793 | 822 | IPR002110 | Ankyrin repeat |
SuperFamily | SSF52540 | 9.03E-8 | 909 | 976 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
SMART | SM00015 | 12 | 926 | 948 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 7.455 | 928 | 956 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.027 | 928 | 947 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 0.16 | 949 | 971 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 7.584 | 950 | 974 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.0033 | 952 | 969 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1102 aa Download sequence Send to blast |
MAEARLYAPP SQLDIKQIIL EAQHRWLRPA EICAILGNYK KFRIAPEPAH MPPSGSLFLF 60 DRKVLRHFRK DGHNWRKKKD GKTVREAHER LKAGSVDVLH CYYAHGEENE NFQRRTYWLL 120 EEELSHIVLV HYRQVKGTKA NFTSAKENEE SLPYAQQTDK IMPQTEMDTS LSSTLHPHSY 180 QVPSKTVDTS MNSAQTSEYE EAESAFNNHA SSEFYSFLEL QRPVEKISPQ PADFYSPRPL 240 INDQEKLPII PGVNYISLTQ DNKNKDILNA GLTYESPKPL GFYSWEGILE NNAGSQHVHF 300 QPLFPGTQPD NMGINSNFSQ GEEIMVPYLT TSIAKQHENG SIIKAEGNWQ VYDVDSLRMS 360 SWPIDSAYSG STCEVSCSNR EQEVNDVDFQ KSLEQCLLHS HKQNKVLMQN DLQEKLLNEK 420 EKIKSNLEAY GIEDTYLSFK RTLLDGPPAE EGLKKLDSFN QWMSKELGDV EESNKPSTSG 480 GYWDTVETEN EVGNTTIPSQ GHLDTYVLDP SVSHDQLFSI IDYSPSWAFE GSEIKVIISG 540 EFLRSQHEAE QCKWSCMFGE VEVPAVIIAK GVLCCHTPPH KAGRVPFYVT CSNRLACSEV 600 REFDFQVHYT PEDTTGENRG STFDTFSIRF GELLSLGHAF PQNSDSISVS EKSQLRSKIN 660 SLLREDDDDW DKLLKLTQEK DFSPENLREQ LLQNLLKDKL HAWLLQKITE EGKGPNVLDE 720 GGQGVLHFAA ALGYDWALEP TIVAGVNVNF RDVNGWTSLH WAAFCGRERT VAFLISLGAA 780 PGALTDPCPE HPSGRTPADL ASANGHKGIA GYLAESSLSA HLTTLDLNRD AGENSGAKVV 840 QRLQNIAQVN DLDGLSYELS LKDSLAAVCN ATQAAARIHQ VFRMQSFQRK QLKEYDDDKL 900 GLSDERALSL IKMNVKSHKS GPRDEPVHAA AIRIQNKFRS WKGRREFLMI RQRIVKIQAH 960 VRGHQVRKSC GKIIWSVGIL EKVILRWRRK GSGLRGFKPE ANSEGTMIQD VSSTDDDYDV 1020 LKEGRKQTEQ RLQKALARVK SMVQYPEARD QYHRLLNVVT EIQENQVKHE SSYNNSEEPR 1080 EFGDLNDLEA LLDEDIFMPT AT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4hb5_A | 2e-12 | 705 | 842 | 20 | 157 | Engineered Protein |
4hb5_B | 2e-12 | 705 | 842 | 20 | 157 | Engineered Protein |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN29055.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 0.0 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028243762.1 | 0.0 | calmodulin-binding transcription activator 3-like isoform X1 | ||||
TrEMBL | A0A445JE84 | 0.0 | A0A445JE84_GLYSO; Calmodulin-binding transcription activator 2 isoform A | ||||
STRING | GLYMA08G14370.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8284 | 27 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64220.2 | 0.0 | Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains |
Publications ? help Back to Top | |||
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