PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN28919.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HD-ZIP
Protein Properties Length: 813aa    MW: 90700.5 Da    PI: 6.8837
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN28919.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox45.51.3e-142273556
                SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox  5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                 ++ ++ + +Lee F+++ +p++ +r+++ ++lgL+ +qVk+WFqN+++  +
  KHN28919.1 22 NRHGRDKVARLEEIFKECTHPNEVRRRQIGEELGLDPEQVKFWFQNKKTHIR 73
                556678899**************************************98655 PP
2START130.61.8e-413285502206
                 HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECT CS
       START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetleviss 87 
                 +ae+a++el+k+ +++ep+W++s      ++  d + ++f +s+       ++e +++s+vv m  a+lve +l++  +W   ++    ka+t++v++s
  KHN28919.1 328 IAEDAMEELMKLLSLNEPFWFRSLldgkFNLRHDCYKRIFGRSNClsgphVRMESSKDSRVVKMSGAQLVEMFLNSD-KWVDLFPtivkKAQTIQVLES 425
                 789**********************9966777777778887777699999999999*********************.88888888888********** PP

                 T......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCE.EEEEEEE-EE--SSXX. CS
       START  88 g......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksngh.skvtwvehvdlkgrlp. 177
                 g      galql +ae+  ls+lvp R+f+f+Ry++q + g wvi dvS+ds +++++   v  a++lpSg+li++ks  + + v w+ehv++++++  
  KHN28919.1 426 GssgnrnGALQLVNAEMHILSHLVPsREFLFLRYCKQIEVGIWVIGDVSIDSSTYKTT---VSHARKLPSGCLIQEKSSEGlCMVSWMEHVEVNEKMQt 521
                 *******************************************************995...77777*********9987666***************99 PP

                 HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
       START 178 hwllrslvksglaegaktwvatlqrqcek 206
                 h+l+r  +    a ga +wv tl+r ce+
  KHN28919.1 522 HNLFRDAICGNNAYGADRWVMTLERMCER 550
                 ***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.6E-13368IPR009057Homeodomain-like
SuperFamilySSF466899.61E-131175IPR009057Homeodomain-like
PROSITE profilePS5007113.5561575IPR001356Homeobox domain
SMARTSM003895.9E-91779IPR001356Homeobox domain
PfamPF000463.3E-122172IPR001356Homeobox domain
CDDcd000867.55E-112173No hitNo description
PROSITE profilePS5084837.419318553IPR002913START domain
SuperFamilySSF559611.0E-21319552No hitNo description
CDDcd088751.91E-84323549No hitNo description
SMARTSM002342.3E-31327550IPR002913START domain
PfamPF018521.7E-34328550IPR002913START domain
Gene3DG3DSA:3.30.530.204.0E-4387516IPR023393START-like domain
SuperFamilySSF559611.13E-7571718No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 813 aa     Download sequence    Send to blast
MSASKSGGGS GRGQQGDYHW RNRHGRDKVA RLEEIFKECT HPNEVRRRQI GEELGLDPEQ  60
VKFWFQNKKT HIRTINERLD TDALRLENER IQSENNKMRE TLENLSCGSC GGRAMEPVKH  120
QLSLQVLRGE NILLTKECER ITSLMAKNGI NINPALLPVL PSSSSHDALG GSLLNQPVGI  180
PAHNQFISNH DNHYIPAAIP TPFQDNPIVS PPSHNQDINP APTIDQHIPT LDDPTLIGDN  240
SPLISSFDYN IPALVTALDR NLPAMIHPHD QNNSIPSAEK EIHQVSNNSN NNLSALELDA  300
VQILNNDMLP QPMKSLIKDM DSVQMLKIAE DAMEELMKLL SLNEPFWFRS LLDGKFNLRH  360
DCYKRIFGRS NCLSGPHVRM ESSKDSRVVK MSGAQLVEMF LNSDKWVDLF PTIVKKAQTI  420
QVLESGSSGN RNGALQLVNA EMHILSHLVP SREFLFLRYC KQIEVGIWVI GDVSIDSSTY  480
KTTVSHARKL PSGCLIQEKS SEGLCMVSWM EHVEVNEKMQ THNLFRDAIC GNNAYGADRW  540
VMTLERMCER FASYSAKTIP SCETGGVVRS PDVKRNIMHL THRMVKMFCG NLDMQDNPNF  600
PNLTRMNNNG VKLSIRVNHT GPNEPKGTII GAATCFRVPL SPQIVFDNLI DNNKRAKWDT  660
LCDGSAGHEI QRISTGSNPG NCISIMRPFI PKENNMVILQ ESYVDALGSM LVFAPFYMEG  720
LDLIMKGEDT SLFPILPSGL TISWDYQSNK VPEGQSGQVG QSRGSLVTLM FQLLASSTSK  780
IDNVDMKLIG SINTLVTSTV EKIKDALNCS NSK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN28919.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2358830.0AC235883.2 Glycine max clone GM_WBc0013D02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006586358.10.0homeobox-leucine zipper protein HDG11
TrEMBLA0A0B2R9U70.0A0A0B2R9U7_GLYSO; Homeobox-leucine zipper protein HDG11
STRINGGLYMA08G09440.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1737556
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.11e-116homeodomain GLABROUS 11
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]