PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN28889.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

BBR-BPC

Protein Properties

Length: 289aa MW: 32265.3 Da PI: 9.9888

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN28889.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	94.7	3e-29	1	197	1	219
GAGA_bind 1 mdddgsrernkgyyepaaslkenlglqlmssiaerdaki....rernlalsekkaavaerd.........maflqrdkalaernkalverdnkllalll 86 mddd + n+gyyep +lglqlm ++erd+k+ r+ + l++ ++++++rd ++ rd+++++ +++++++++ KHN28889.1 1 MDDDVLNMPNWGYYEPF--RGGHLGLQLMPGMTERDTKPflpgRDPAM-LMGANGTFHPRDcvvseapmpLNY-VRDSWINQ--------RDRFFHMQQ 87 899988779****98..4579**************9888888.99******999999988788.89999999........678889888 PP GAGA_bind 87 venslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesade 185 +n +++ vl++t+ + +l+ ++++ + r+e+ +++++ ++e ++kk++++ ++pk+kk +k+k+ +++ + + KHN28889.1 88 PTN-------PNYAVLPETSGAPNLKI-----IQPPDTS-RDEKVDRVEEVVV-KKELGKSKKRHTKGALSTPKAKKPRKPKD-------NSNVPV--Q 163 555.......46899999999998887.....3333332.3333222333222.22333333333344556667766666666.......445555..6 PP GAGA_bind 186 rskaekksidlvlngvslDestlPvPvCsCtGal 219 r+k +kk+++lv+ng+++D+s lP+PvCsCtGa+ KHN28889.1 164 RAKPPKKTMELVINGIDMDISDLPIPVCSCTGAP 197 799***************************86 PP
2	GAGA_bind	225.2	5.6e-69	197	289	209	301
GAGA_bind 209 PvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 P+PvCsCtGa++qCY+WG+GGWqSaCCtt++S+yPLP+s krrgaRiagrKmSqgafkk+LekLaaeGy+++np+DLk+hWA+HGtnkfvtir KHN28889.1 197 PTPVCSCTGAPQQCYRWGCGGWQSACCTTNVSIYPLPMSMKRRGARIAGRKMSQGAFKKVLEKLAAEGYNFANPIDLKTHWARHGTNKFVTIR 289 9*******************************************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF06217	7.0E-39	1	197	IPR010409	GAGA-binding transcriptional activator
SMART	SM01226	1.9E-156	1	289	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	2.7E-67	197	289	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence Send to blast
MDDDVLNMPN WGYYEPFRGG HLGLQLMPGM TERDTKPFLP GRDPAMLMGA NGTFHPRDCV 60 VSEAPMPLNY VRDSWINQRD RFFHMQQPTN PNYAVLPETS GAPNLKIIQP PDTSRDEKVD 120 RVEEVVVKKE LGKSKKRHTK GALSTPKAKK PRKPKDNSNV PVQRAKPPKK TMELVINGID 180 MDISDLPIPV CSCTGAPTPV CSCTGAPQQC YRWGCGGWQS ACCTTNVSIY PLPMSMKRRG 240 ARIAGRKMSQ GAFKKVLEKL AAEGYNFANP IDLKTHWARH GTNKFVTIR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269\|PubMed:14731261, ECO:0000269\|PubMed:15722463}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN28889.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT096215	0.0	BT096215.1 Soybean clone JCVI-FLGm-15O8 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006585066.1	0.0	protein BASIC PENTACYSTEINE2
Refseq	XP_006585067.1	0.0	protein BASIC PENTACYSTEINE2
Refseq	XP_014634278.1	0.0	protein BASIC PENTACYSTEINE2
Refseq	XP_028243308.1	0.0	protein BASIC PENTACYSTEINE2-like
Refseq	XP_028243310.1	0.0	protein BASIC PENTACYSTEINE2-like
Refseq	XP_028243311.1	0.0	protein BASIC PENTACYSTEINE2-like
Swissprot	Q9SKD0	1e-101	BPC1_ARATH; Protein BASIC PENTACYSTEINE1
TrEMBL	A0A0B2R9R8	0.0	A0A0B2R9R8_GLYSO; Protein BASIC PENTACYSTEINE1
STRING	GLYMA08G09780.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2370	32	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01930.2	1e-102	basic pentacysteine1

Publications ? help Back to Top
Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933]