PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN28233.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family CO-like
Protein Properties Length: 349aa    MW: 38811.4 Da    PI: 6.3891
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN28233.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.31.2e-06448240
    zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                e+r C+ +++  + l+C+ ++  lC +C  e H+       Ht++
  KHN28233.1  4 EARSCDYCGHSTALLYCRADSAKLCFSCDREVHSTnqlfskHTRT 48
                5789******99*********************668888888876 PP
2zf-B_box27.37.6e-095093542
    zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvpl 42
                 C+ +++ ++++ C ++ + lC++C  e+H +       H+++pl
  KHN28233.1 50 LCDACDHSPATILCSTDTSVLCQNCDWEKH-NpalsdslHERRPL 93
                7*****************************.54888999988775 PP
3CCT64.33.6e-22303345143
         CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                 R+ allRYk+K+ktR+F+K+irYesRK++AesR RvKGrF+k 
  KHN28233.1 303 RDSALLRYKQKKKTRRFDKHIRYESRKVRAESRVRVKGRFAKM 345
                 899**************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.239350IPR000315B-box-type zinc finger
SMARTSM003368.3E-15350IPR000315B-box-type zinc finger
PfamPF006431.8E-5548IPR000315B-box-type zinc finger
CDDcd000213.66E-7650No hitNo description
PROSITE profilePS5011910.1254693IPR000315B-box-type zinc finger
PfamPF006431.2E-65093IPR000315B-box-type zinc finger
CDDcd000212.47E-55093No hitNo description
SMARTSM003360.225193IPR000315B-box-type zinc finger
PROSITE profilePS5101714.763303345IPR010402CCT domain
PfamPF062031.9E-16303345IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MSGEARSCDY CGHSTALLYC RADSAKLCFS CDREVHSTNQ LFSKHTRTLL CDACDHSPAT  60
ILCSTDTSVL CQNCDWEKHN PALSDSLHER RPLEGFTGCP SVSELLSIVG FSDLSKKSLL  120
SSPQGSGADG IFGGEIEGLS DLFVWDSPSF VTLDDLISSS PSSHSFQAME VPPLPKNRKA  180
ACGQHKEEIL SQLRELAKSE PLDLEPYVSS GNLSSGFERE PEADIFPSHE WHRESSEPMY  240
QVVPPDPLMR TYTEEIPFKH STSAVGETQT YGDNGGKPSI SLKSETLSTT PKAAACELTS  300
QERDSALLRY KQKKKTRRFD KHIRYESRKV RAESRVRVKG RFAKMEHEH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1311317QKKKTRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN28233.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM0688960.0HM068896.1 Glycine max CONSTANS-like zinc finger protein (COL15) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001278943.10.0zinc finger protein CONSTANS-LIKE 13-like
RefseqXP_028226195.10.0zinc finger protein CONSTANS-LIKE 13-like
TrEMBLA0A0B2R8H10.0A0A0B2R8H1_GLYSO; Zinc finger protein CONSTANS-LIKE 13
TrEMBLI1JQH30.0I1JQH3_SOYBN; CONSTANS-like zinc finger protein
STRINGGLYMA03G36810.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70553145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47890.11e-87B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]