PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN28079.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | NAC | ||||||||
Protein Properties | Length: 343aa MW: 38442 Da PI: 8.0851 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 178.1 | 2.3e-55 | 8 | 136 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kge 98 lppGfrFhPtdeel+++yL kkv +++++ ++i+evd++k+ePw+Lp+k+k +ekewyfFs rd+ky+tg r+nrat++gyWkatgkd+e++s+ + + KHN28079.1 8 LPPGFRFHPTDEELITYYLLKKVLDSTFTG-RAIAEVDLNKSEPWELPEKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSkTCS 105 79*************************999.89***************99999****************************************974556 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrle 129 lvg+kktLvfy+grapkgek++Wvmheyrle KHN28079.1 106 LVGMKKTLVFYRGRAPKGEKSNWVMHEYRLE 136 7****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.18E-62 | 6 | 160 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.251 | 8 | 160 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.0E-29 | 9 | 135 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 343 aa Download sequence Send to blast |
MDHTEAHLPP GFRFHPTDEE LITYYLLKKV LDSTFTGRAI AEVDLNKSEP WELPEKAKMG 60 EKEWYFFSLR DRKYPTGLRT NRATEAGYWK ATGKDREIYS SKTCSLVGMK KTLVFYRGRA 120 PKGEKSNWVM HEYRLEGKFA YHYLSRNSED EWVISRVFRK SNTTPITNGG STMSASTNSK 180 KTRINNTTSL IHEPSSPSSV FLPPLLDSSP YTNTTTNTFT DHHNSSYDSA TKKEHVSCFS 240 TIAAATAVVS PNNNFNNASF DLPPSQPLAT DPFARFQRNA GLSAFPSLRS LQDNLQLPFF 300 FSTAAAPPFS GGVSGDFLSW PVPDDGVSNM PLGVSELDCM WGY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-52 | 4 | 164 | 13 | 169 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-52 | 4 | 164 | 13 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-52 | 4 | 164 | 13 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-52 | 4 | 164 | 13 | 169 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-52 | 4 | 163 | 16 | 171 | NAC domain-containing protein 19 |
3swm_B | 1e-52 | 4 | 163 | 16 | 171 | NAC domain-containing protein 19 |
3swm_C | 1e-52 | 4 | 163 | 16 | 171 | NAC domain-containing protein 19 |
3swm_D | 1e-52 | 4 | 163 | 16 | 171 | NAC domain-containing protein 19 |
3swp_A | 1e-52 | 4 | 163 | 16 | 171 | NAC domain-containing protein 19 |
3swp_B | 1e-52 | 4 | 163 | 16 | 171 | NAC domain-containing protein 19 |
3swp_C | 1e-52 | 4 | 163 | 16 | 171 | NAC domain-containing protein 19 |
3swp_D | 1e-52 | 4 | 163 | 16 | 171 | NAC domain-containing protein 19 |
4dul_A | 1e-52 | 4 | 164 | 13 | 169 | NAC domain-containing protein 19 |
4dul_B | 1e-52 | 4 | 164 | 13 | 169 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator of STM and KNAT6. Involved in molecular mechanisms regulating shoot apical meristem (SAM) formation during embryogenesis and organ separation. Required for the fusion of septa of gynoecia along the length of the ovaries. Activates the shoot formation in callus in a STM-dependent manner. Controls leaf margin development and required for leaf serration. Involved in axillary meristem initiation and separation of the meristem from the main stem. Regulates the phyllotaxy throughout the plant development. Seems to act as an inhibitor of cell division. {ECO:0000269|PubMed:10079219, ECO:0000269|PubMed:10750709, ECO:0000269|PubMed:12163400, ECO:0000269|PubMed:12492830, ECO:0000269|PubMed:12610213, ECO:0000269|PubMed:15202996, ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:15500463, ECO:0000269|PubMed:15723790, ECO:0000269|PubMed:16798887, ECO:0000269|PubMed:17098808, ECO:0000269|PubMed:17122068, ECO:0000269|PubMed:17251269, ECO:0000269|PubMed:17287247, ECO:0000269|PubMed:9212461}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN28079.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By BRM and SYD, at the chromatin level, and conferring a very specific spatial expression pattern. Precise spatial regulation by post-transcriptional repression directed by the microRNA miR164. {ECO:0000269|PubMed:15202996, ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:15723790, ECO:0000269|PubMed:16854978, ECO:0000269|PubMed:17251269, ECO:0000269|PubMed:17287247}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX392401 | 0.0 | JX392401.1 Glycine max NAC domain protein (NLP4) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028193876.1 | 0.0 | protein CUP-SHAPED COTYLEDON 2-like | ||||
Swissprot | O04017 | 1e-114 | NAC98_ARATH; Protein CUP-SHAPED COTYLEDON 2 | ||||
TrEMBL | A0A445HTY9 | 0.0 | A0A445HTY9_GLYSO; Protein CUP-SHAPED COTYLEDON 2 | ||||
STRING | GLYMA12G35530.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3689 | 34 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53950.1 | 1e-110 | NAC family protein |