PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN27999.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | NF-YC | ||||||||
Protein Properties | Length: 123aa MW: 13270.3 Da PI: 8.2368 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 102.7 | 2.6e-32 | 22 | 104 | 19 | 100 |
NF-YC 19 helPlarikkilkad.edvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprde 100 h+lPlarikki+k e vkmis eaP+++skac+lfi elt rsw+ a + krrtl+k d+a+av tdifdfl+ v +++ KHN27999.1 22 HSLPLARIKKIMKNSgEGVKMISGEAPIIFSKACDLFIEELTRRSWIMAIQGKRRTLHKEDLASAVIATDIFDFLITLVSNSD 104 99***********75277**********************************************************9998765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 2.4E-26 | 17 | 96 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 1.7E-29 | 19 | 87 | IPR009072 | Histone-fold |
Pfam | PF00808 | 9.1E-20 | 23 | 87 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 123 aa Download sequence Send to blast |
MRQAGAYSGL LCGGVSGRTG PHSLPLARIK KIMKNSGEGV KMISGEAPII FSKACDLFIE 60 ELTRRSWIMA IQGKRRTLHK EDLASAVIAT DIFDFLITLV SNSDSHAVGG ATNVMEVETI 120 DYS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 2e-30 | 22 | 100 | 16 | 93 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of flowering time under long day (LD) conditions. Functions as repressor of flowering, independently of HD1 and GHD7. Controls flowering time by negatively regulating the expression of EHD1 and HD3A (PubMed:26542958). Component of the NF-Y/HAP transcription factor complex (By similarity). {ECO:0000250, ECO:0000269|PubMed:26542958}. | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN27999.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation under long day (LD) conditions. Expression increases in the middle of daytime, peaks around the end of the light period and gradually decreases during the dark period and beginning of daylight. {ECO:0000269|PubMed:26542958}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015042 | 1e-129 | AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001349562.1 | 7e-87 | nuclear factor Y transcription factor family protein | ||||
Refseq | XP_028192640.1 | 7e-87 | nuclear transcription factor Y subunit C-1-like | ||||
Swissprot | Q655V5 | 9e-30 | NFYC4_ORYSJ; Nuclear transcription factor Y subunit C-4 | ||||
Swissprot | Q9ZVL3 | 6e-30 | NFYC3_ARATH; Nuclear transcription factor Y subunit C-3 | ||||
TrEMBL | A0A445HTL5 | 2e-85 | A0A445HTL5_GLYSO; Nuclear transcription factor Y subunit C-3 | ||||
TrEMBL | I1LUT9 | 2e-85 | I1LUT9_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA12G34510.1 | 3e-86 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10559 | 28 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G54830.3 | 2e-32 | nuclear factor Y, subunit C3 |