PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN27990.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 386aa    MW: 43304.6 Da    PI: 5.977
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN27990.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS430.71.2e-131153841373
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 l++lL++cA+a+s+++++  ++l+ r ++ +s +g+p+qRl ay++e+L ar + s++++y+al+++e +    +e l++++l++e++P+lkf++++aN
  KHN27990.1  15 LKQLLIACAKALSENNMNDFDQLVGRAKDAVSINGEPIQRLGAYMVEGLVARTQASGNSIYHALRCKEPE---GDELLTYMQLLFEICPYLKFGYMAAN 110
                 689******************************************************************9...9************************* PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                  aI ea  +e+r+HiiDf+i qG+QW++LlqaLa+Rp+g+p++RiTg+++p s+  + +  e +g+rLa + e++g+p+ef+  v     d++ e+L++
  KHN27990.1 111 GAIAEACRNEDRIHIIDFQIAQGTQWMTLLQALAARPGGAPHVRITGIDDPVSKyaRGDGPEVVGKRLALMSEKFGIPVEFHG-VPVFAPDVTREMLDI 208
                 ***************************************************99999999************************.688899********* PP

        GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295
                 +pgEalaVn+ lqlh++ desv+++++rd +L+lv+slsPkv ++veqe+++n+++F++rf+e+l+yy a+f+s++++lpr+s+eri+vE+++l+r+iv
  KHN27990.1 209 RPGEALAVNFPLQLHHTADESVHVSNPRDGLLRLVRSLSPKVTTLVEQESNTNTTPFFNRFIETLDYYLAIFESIDVTLPRDSKERINVEQHCLARDIV 307
                 *************************************************************************************************** PP

        GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                 n++aceg+er+erhe ++kW++rl++aGF++ pls+++++ +++llr ++ + y++ e++g+++lgWkdr+L+s+SaW
  KHN27990.1 308 NIIACEGKERVERHELFGKWKSRLKMAGFQQCPLSSYVNSVIRSLLRCYS-EHYTLVEKDGAMLLGWKDRNLISASAW 384
                 **********************************************9999.66************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.3461366IPR005202Transcription factor GRAS
PfamPF035144.0E-12915384IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MEEEATLEAF PPNNLKQLLI ACAKALSENN MNDFDQLVGR AKDAVSINGE PIQRLGAYMV  60
EGLVARTQAS GNSIYHALRC KEPEGDELLT YMQLLFEICP YLKFGYMAAN GAIAEACRNE  120
DRIHIIDFQI AQGTQWMTLL QALAARPGGA PHVRITGIDD PVSKYARGDG PEVVGKRLAL  180
MSEKFGIPVE FHGVPVFAPD VTREMLDIRP GEALAVNFPL QLHHTADESV HVSNPRDGLL  240
RLVRSLSPKV TTLVEQESNT NTTPFFNRFI ETLDYYLAIF ESIDVTLPRD SKERINVEQH  300
CLARDIVNII ACEGKERVER HELFGKWKSR LKMAGFQQCP LSSYVNSVIR SLLRCYSEHY  360
TLVEKDGAML LGWKDRNLIS ASAWHC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-642238426378Protein SCARECROW
5b3h_A4e-642238425377Protein SCARECROW
5b3h_D4e-642238425377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN27990.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028194506.10.0scarecrow-like protein 21
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLA0A445HTJ20.0A0A445HTJ2_GLYSO; Chitin-inducible gibberellin-responsive protein 1 isoform A
STRINGGLYMA12G34420.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42993360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.21e-175GRAS family protein
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]
  2. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]