PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN27949.1
Organism
Glycine soja
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family G2-like
Protein Properties Length: 368aa    MW: 41881.4 Da    PI: 8.1527
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN27949.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.31.3e-3190143255
     G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                 prlrWtp+LH +Fv+ave+LGG+e+AtPk +l+lm+v gL+++hvkSHLQ+YR+
  KHN27949.1  90 PRLRWTPDLHLAFVHAVERLGGQERATPKLVLQLMNVRGLSIAHVKSHLQMYRS 143
                 8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.56286146IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.7E-3086144IPR009057Homeodomain-like
SuperFamilySSF466892.33E-1488144IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-2290145IPR006447Myb domain, plants
PfamPF002495.5E-991142IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MDETICVSEE DHKSGSSKPS SPSLRRKRSF FDLNEEAVDG GGDDSTSDDD PINSNDISSQ  60
EGNLSSNNNS SEEGKERAST VRQYVRSKMP RLRWTPDLHL AFVHAVERLG GQERATPKLV  120
LQLMNVRGLS IAHVKSHLQM YRSKKLDESG QVLSHNRSMQ GRHSIFYMYG RLNAPRHFGN  180
DNRNYLPSSV FMEQTPYEIS AHGSSRLHPT ALFNSKMMIR SSSGWDKDLY NCQSYQRSFC  240
SPNLTGHAKF DAEVHDVKNR MPEFINQVQV WKQGDIKDQL ERLNEMKASP SFLELKLSQD  300
SRNARDYQMN KDTESEQKIN TKLSLSLFTS SSSSSNSSQQ AQCCEKNKDN THVESFCFQN  360
YAPRNRLG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A8e-1991145357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B8e-1991145357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C8e-1991145357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D8e-1991145357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKHN27949.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006592875.10.0uncharacterized protein LOC102668520
RefseqXP_028193816.10.0uncharacterized protein LOC114379372
TrEMBLA0A445HTE30.0A0A445HTE3_GLYSO; Putative Myb family transcription factor
TrEMBLK7LW740.0K7LW74_SOYBN; Uncharacterized protein
STRINGGLYMA12G33911.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30123270
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.11e-37G2-like family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]