![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | KHN27910.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 441aa MW: 48724.8 Da PI: 6.3073 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 87.6 | 1.1e-27 | 170 | 224 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k +++WtpeLH+rFv+aveqL G +kA+P++ile+m++++Lt+++++SHLQkYR++ KHN27910.1 170 KVKVDWTPELHRRFVQAVEQL-GVDKAVPSRILEIMGIDCLTRHNIASHLQKYRSH 224 5689*****************.********************************86 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.042 | 167 | 226 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.02E-18 | 168 | 227 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.7E-26 | 168 | 227 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.5E-26 | 170 | 224 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.4E-7 | 173 | 222 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0010638 | Biological Process | positive regulation of organelle organization | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 441 aa Download sequence Send to blast |
MLAVSPLRST RDEGQGEMME SFSIGTDDFA DLSEGNLLES INFDDLFMGI NDDEDVLPDL 60 EMDPEMLAEF SLSTEESDMA SSSVSVENNN KSADNNNNND GNNIVTTEKQ DEVIVIAANS 120 SSDSGSSRGE EIVSKSDESV VMNPSRKESE KGRKSSNHAA RNNNPQGKRK VKVDWTPELH 180 RRFVQAVEQL GVDKAVPSRI LEIMGIDCLT RHNIASHLQK YRSHRKHLLA REAEAARWSQ 240 RKQLLAAAGV GRGGGSKREV NPWLTPTMGF PPMTSMHHFR PLHVWGHQTM DQSFMHMWPK 300 HPPYLPSPPV WPPQTAPSPP APDPLYWHQH QRAPNAPTRG TPCFPQPLTT TRFGSQTVPG 360 IPPRHAMYQI LDPGIGIPAS QTPPRPLVDF HPSKESIDAA ISDVLSKPWL PLPLGLKAPA 420 LDGVMGELQR QGIPKIPPSY A |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 2e-15 | 167 | 222 | 2 | 57 | ARR10-B |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | KHN27910.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015040 | 5e-98 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003540379.1 | 0.0 | transcription activator GLK1 | ||||
Refseq | XP_028192445.1 | 0.0 | transcription activator GLK1-like | ||||
TrEMBL | A0A445HT79 | 0.0 | A0A445HT79_GLYSO; Transcription activator GLK1 | ||||
TrEMBL | I1LUI9 | 0.0 | I1LUI9_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA12G33430.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4242 | 34 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G20570.1 | 3e-79 | GBF's pro-rich region-interacting factor 1 |
Publications ? help Back to Top | |||
---|---|---|---|
|