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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KHN27541.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | LBD | ||||||||
Protein Properties | Length: 164aa MW: 18131.3 Da PI: 6.7447 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 143.1 | 8.8e-45 | 10 | 108 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrrkC +dC++apyfp e+p+kfanvhk+FGasnv+kll+++++++reda++sl+yeAear++dPvyG+vg i+ lq+q+ +l++el+++ + KHN27541.1 10 PCAACKFLRRKCMPDCIFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARIKDPVYGCVGAISVLQRQVIRLQKELDATSA 108 7*********************************************************************************************98765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 27.786 | 9 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.4E-44 | 10 | 106 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 164 aa Download sequence Send to blast |
MASSSYSNSP CAACKFLRRK CMPDCIFAPY FPPEEPQKFA NVHKIFGASN VSKLLNEVQP 60 HQREDAVNSL AYEAEARIKD PVYGCVGAIS VLQRQVIRLQ KELDATSADL IRYTCNEMPT 120 TTQDGRRIIG EGGGSSLGQS SGYYYPSPWN NDTLGDGYHR GDNI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-67 | 7 | 118 | 8 | 119 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-67 | 7 | 118 | 8 | 119 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KHN27541.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT090839 | 1e-161 | BT090839.1 Soybean clone JCVI-FLGm-5B3 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003548568.1 | 1e-122 | LOB domain-containing protein 25 | ||||
Refseq | XP_014624042.1 | 1e-122 | LOB domain-containing protein 25 | ||||
Refseq | XP_014624043.1 | 1e-122 | LOB domain-containing protein 25 | ||||
Refseq | XP_014624044.1 | 1e-122 | LOB domain-containing protein 25 | ||||
Refseq | XP_028206945.1 | 1e-122 | LOB domain-containing protein 25-like | ||||
Refseq | XP_028206946.1 | 1e-122 | LOB domain-containing protein 25-like | ||||
Swissprot | Q8L8Q3 | 1e-67 | LBD25_ARATH; LOB domain-containing protein 25 | ||||
TrEMBL | A0A0R0FV53 | 1e-120 | A0A0R0FV53_SOYBN; Uncharacterized protein | ||||
TrEMBL | A0A0R0FVB0 | 1e-120 | A0A0R0FVB0_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA16G07770.2 | 1e-121 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1091 | 34 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27650.1 | 2e-70 | LOB domain-containing protein 25 |
Publications ? help Back to Top | |||
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