PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN27391.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

G2-like

Protein Properties

Length: 428aa MW: 46838.6 Da PI: 7.4801

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN27391.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.5	5.3e-32	248	303	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+p+LH+rFv+a++ LGGs++AtPk+i+elmkv+gLt+++vkSHLQkYRl+ KHN27391.1 248 KARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 303 68****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.355	245	305	IPR017930	Myb domain
SuperFamily	SSF46689	5.82E-17	245	306	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.8E-28	246	306	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.1E-26	248	303	IPR006447	Myb domain, plants
Pfam	PF00249	7.3E-7	250	301	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 428 aa Download sequence Send to blast
MASPSELSLD CKPQSYSLLL KSFGDQTDHS YKLEEFLNRL EEERLKIDAF KRELPLCMQL 60 LTNAMEASRQ QLQAFKVNHG AKPVLEEFIP MKHLASESSE KATNMSDKAN WMTSAQLWSQ 120 ASSEGTKQQP PITTLKESDI GFSISPKLAL DNKQRNGGGA FLPFSKERNS CQGSTLRPLP 180 ELVLASAEKE MEDKKRAEVE IKGVSCQSRK ENSGSDGAVV DQGKGGSPVA SSHAQTTTTT 240 TSAQTHRKAR RCWSPDLHRR FVNALQMLGG SQVATPKQIR ELMKVDGLTN DEVKSHLQKY 300 RLHTRRPSPS PQAVGAAPQL VVLGGIWVPP EYATAAHTAT PTLYGAHPPL LPPPPPHHNA 360 LHHLHMYKAA PHGQGSPESD VPSNGERSES IEDGKSESSS WKGESGENEG ERKGIGEESN 420 GSEITLKF

Sequence ? help Back to Top

Protein Sequence Length: 428 aa Download sequence Send to blast

MASPSELSLD CKPQSYSLLL KSFGDQTDHS YKLEEFLNRL EEERLKIDAF KRELPLCMQL  60
LTNAMEASRQ QLQAFKVNHG AKPVLEEFIP MKHLASESSE KATNMSDKAN WMTSAQLWSQ  120
ASSEGTKQQP PITTLKESDI GFSISPKLAL DNKQRNGGGA FLPFSKERNS CQGSTLRPLP  180
ELVLASAEKE MEDKKRAEVE IKGVSCQSRK ENSGSDGAVV DQGKGGSPVA SSHAQTTTTT  240
TSAQTHRKAR RCWSPDLHRR FVNALQMLGG SQVATPKQIR ELMKVDGLTN DEVKSHLQKY  300
RLHTRRPSPS PQAVGAAPQL VVLGGIWVPP EYATAAHTAT PTLYGAHPPL LPPPPPHHNA  360
LHHLHMYKAA PHGQGSPESD VPSNGERSES IEDGKSESSS WKGESGENEG ERKGIGEESN  420
GSEITLKF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-14	248	301	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-14	248	301	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-14	248	301	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-14	248	301	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-14	248	301	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-14	248	301	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-14	248	301	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-14	248	301	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-14	248	301	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-14	248	301	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-14	248	301	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-14	248	301	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor acting as a flowering repressor, directly repressing FT expression in a dosage-dependent manner in the leaf vasculature. {ECO:0000269\|PubMed:25132385}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN27391.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by SVP. Down-regulated by high temperature and gibberellic acid treatment. Not regulated by photoperiod, circadian rhythm under long days or vernalization. {ECO:0000269\|PubMed:25132385}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003525655.1	0.0	myb family transcription factor EFM
Refseq	XP_028231187.1	0.0	myb family transcription factor EFM-like
Swissprot	Q9ZQ85	1e-123	EFM_ARATH; Myb family transcription factor EFM
TrEMBL	A0A445KIL4	0.0	A0A445KIL4_GLYSO; Myb family transcription factor EFM
TrEMBL	I1K1C4	0.0	I1K1C4_SOYBN; Uncharacterized protein
STRING	GLYMA05G08150.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5466	34	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03500.1	1e-109	G2-like family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933]