PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

bZIP

Protein Properties

Length: 444aa MW: 49505.4 Da PI: 6.1981

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN27124.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	30.1	1e-09	157	199	3	45
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 + k rr+++NReAAr+sR+RKka++++Le +L++ ++L KHN27124.1 157 DQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQEL 199 568899************************9777777666555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	3.0E-8	151	202	No hit	No description
Pfam	PF07716	6.3E-7	155	201	IPR004827	Basic-leucine zipper domain
SMART	SM00338	2.2E-6	155	218	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.415	157	201	IPR004827	Basic-leucine zipper domain
CDD	cd14708	7.06E-21	159	210	No hit	No description
SuperFamily	SSF57959	9.14E-7	159	202	No hit	No description
PROSITE pattern	PS00036	0	162	177	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	5.4E-33	241	316	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 444 aa Download sequence Send to blast
MPSFDSQLPN SNACYTEGSA IDSFCVFDFD QSVGYRIEDC VALRGNSVFD SLKVSSQTIS 60 RGPVEVDSFD KLPTSLNKNP LTSQTERQRL QLQKVQLSNL VSGDTEHQEE SAMADASPRT 120 DISTDVDTDD KNPRFDRSQS LVAVVSDSSD RSKDKSDQKT LRRLAQNREA ARKSRLRKKA 180 YVQQLESSRL KLTQLEQELQ RARQQGIIIS NSGDQAHSMS GNGAMAFDVE YARWLEEQNR 240 QVNELRAAVN SHAGDTELRM IIDGIMAHYD EIFRLKADAA KADVFHLLSG MWKTPAERCF 300 LWLGGFRSSE LLKLLVNQLE PLTEQQLVGI TNLQQSSQQA EDALSQGMEA LQQSLSETLS 360 TGSLGSSGSS GNVANYMGQM AMAMGKLGTL EGFIKQADNL RQQTLQQIHR ILTTRQSARA 420 LLAIHDYFSR LRALSSLWLA RPRD

Sequence ? help Back to Top

Protein Sequence Length: 444 aa Download sequence Send to blast

MPSFDSQLPN SNACYTEGSA IDSFCVFDFD QSVGYRIEDC VALRGNSVFD SLKVSSQTIS  60
RGPVEVDSFD KLPTSLNKNP LTSQTERQRL QLQKVQLSNL VSGDTEHQEE SAMADASPRT  120
DISTDVDTDD KNPRFDRSQS LVAVVSDSSD RSKDKSDQKT LRRLAQNREA ARKSRLRKKA  180
YVQQLESSRL KLTQLEQELQ RARQQGIIIS NSGDQAHSMS GNGAMAFDVE YARWLEEQNR  240
QVNELRAAVN SHAGDTELRM IIDGIMAHYD EIFRLKADAA KADVFHLLSG MWKTPAERCF  300
LWLGGFRSSE LLKLLVNQLE PLTEQQLVGI TNLQQSSQQA EDALSQGMEA LQQSLSETLS  360
TGSLGSSGSS GNVANYMGQM AMAMGKLGTL EGFIKQADNL RQQTLQQIHR ILTTRQSARA  420
LLAIHDYFSR LRALSSLWLA RPRD

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KHN27124.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT093315	0.0	BT093315.1 Soybean clone JCVI-FLGm-24E7 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001242879.2	0.0	bZIP transcription factor family protein
Refseq	XP_014627739.1	0.0	bZIP transcription factor family protein isoform X1
Refseq	XP_014627740.1	0.0	bZIP transcription factor family protein isoform X1
Refseq	XP_028222401.1	0.0	transcription factor TGA2-like isoform X1
Refseq	XP_028222402.1	0.0	transcription factor TGA2-like isoform X1
Swissprot	Q6IVC2	0.0	TGAL1_ORYSJ; Transcription factor TGAL1
TrEMBL	A0A0B2R4J0	0.0	A0A0B2R4J0_GLYSO; Transcription factor HBP-1b(C1)
TrEMBL	I1NJB9	0.0	I1NJB9_SOYBN; Uncharacterized protein
STRING	GLYMA20G39050.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1470	34	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12250.2	1e-148	TGACG motif-binding factor 6

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709] Qi X, et al. Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing. Nat Commun, 2014. 5: p. 4340 [PMID:25004933]